Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0680
(730 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz... 34 0.024
SPBC16C6.08c |qcr6||ubiquinol-cytochrome-c reductase complex sub... 31 0.037
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur... 29 0.51
SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual 29 0.51
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr... 29 0.90
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ... 28 1.2
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe... 28 1.2
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p... 28 1.2
SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M... 27 2.7
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc... 27 3.6
SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit ... 26 4.8
SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|ch... 26 4.8
SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|ch... 26 6.3
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces... 26 6.3
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb... 25 8.4
SPCC1753.03c |rec7||meiotic recombination protein Rec7 |Schizosa... 25 8.4
>SPCC1795.08c |||histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 985
Score = 33.9 bits (74), Expect = 0.024
Identities = 26/100 (26%), Positives = 40/100 (40%), Gaps = 1/100 (1%)
Frame = +3
Query: 6 VPSIDSAEE-SSSEGLTNSVMVGAVEKAIDAIERDDTMDNLSSGGSTNELVIDTARATPV 182
VP +D EE S E V V+ ID + ++N + +D A +PV
Sbjct: 278 VPKVDEVEEVHSPEAKVTENDVENVQSGIDIEKTIQLLNNQEIPSEQQIISVDKATESPV 337
Query: 183 PQVTPQSARPPVDLSGLELLSNSIEQFERTTPGTSMPSLE 302
+V PVD E++ S Q E P P+++
Sbjct: 338 QEVAVDVNEKPVD----EIVEPSKLQMENKLPSEKSPTID 373
>SPBC16C6.08c |qcr6||ubiquinol-cytochrome-c reductase complex
subunit 8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 214
Score = 31.1 bits (67), Expect(2) = 0.037
Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
Frame = +3
Query: 201 SARPPVDLSGLELLSNSIEQFERTTPG-----TSMPSLEPVPLTVDTRPTSKLNIMIKT 362
SA P+ EL+ +QFE TP T P EP P T D+ N+ +KT
Sbjct: 10 SAFTPISAEADELIKEDRKQFEENTPSKKNFETQSPD-EPSPKTTDSTGARDANLSLKT 67
Score = 21.0 bits (42), Expect(2) = 0.037
Identities = 8/25 (32%), Positives = 12/25 (48%)
Frame = +3
Query: 354 IKTSPKSPPRTEAEPHRRFEFPPAD 428
+KT P P E + + E PP +
Sbjct: 101 VKTEPPQPEEKEGKEAKEPEEPPKE 125
>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 398
Score = 29.5 bits (63), Expect = 0.51
Identities = 16/57 (28%), Positives = 28/57 (49%)
Frame = +3
Query: 51 TNSVMVGAVEKAIDAIERDDTMDNLSSGGSTNELVIDTARATPVPQVTPQSARPPVD 221
T S G + +I + + L++G + + + T + P QV P SA+PP+D
Sbjct: 31 TTSTATGIAKVSIPTPKPSTPLSTLTNGSTIQQSM--TNQPEPTSQVPPISAKPPMD 85
>SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual
Length = 319
Score = 29.5 bits (63), Expect = 0.51
Identities = 21/95 (22%), Positives = 38/95 (40%), Gaps = 1/95 (1%)
Frame = +3
Query: 165 ARATPVPQVTPQSARPPVDLSGLELLSNSIEQ-FERTTPGTSMPSLEPVPLTVDTRPTSK 341
A A P T ++ P ++ ++ Q + + GT++PS P+ + T++
Sbjct: 131 ANAHHQPAQTTTTSIPTSATDNYTTVNGNVNQSYSKGIDGTALPSTHANPVAAPSTATTQ 190
Query: 342 LNIMIKTSPKSPPRTEAEPHRRFEFPPADPCNAEP 446
+ KTS S + P + P A EP
Sbjct: 191 HTQLPKTSAVSHQKPHEAPSTAVKAPTATVAENEP 225
>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 872
Score = 28.7 bits (61), Expect = 0.90
Identities = 25/72 (34%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Frame = +3
Query: 144 NELVIDTARATPVPQVTPQSARPPVD-LSGLELLSNSIEQFERTTPGTSMPSLEPVPLTV 320
NEL + A + ++ S P V L +ELL E TT +S PS P T
Sbjct: 160 NELGLTDAALFSISEIYKPSTAPLVRALQTIELLLKKYE-VSNTTKSSSTPS----PSTD 214
Query: 321 DTRPTSKLNIMI 356
D PT LN +I
Sbjct: 215 DNVPTGTLNSLI 226
>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 28.3 bits (60), Expect = 1.2
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Frame = -1
Query: 577 KGSFLTNGREDMDRLFCGLSSTSSMNLCSANAHNNPKPPRAGFAGSALQG-SAGGNSN 407
KGS L N + + +++S N SA A +N PP + S + SA G N
Sbjct: 105 KGSALFNSANSIGTPYLSSRNSNSANEASAMAFHNVSPPSGAESSSESKSFSASGKGN 162
>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 871
Score = 28.3 bits (60), Expect = 1.2
Identities = 18/48 (37%), Positives = 24/48 (50%)
Frame = +3
Query: 192 TPQSARPPVDLSGLELLSNSIEQFERTTPGTSMPSLEPVPLTVDTRPT 335
TP S P D G +L N+ F +P S+P+ PV + TRPT
Sbjct: 606 TPLSKPQPKDTKGSKL-GNT---FVAPSPAASLPASPPVGTELKTRPT 649
>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 932
Score = 28.3 bits (60), Expect = 1.2
Identities = 15/61 (24%), Positives = 23/61 (37%)
Frame = -1
Query: 313 NGTGSKEGMLVPGVVLSNCSMLFERSSNPLRSTGGLALWGVTCGTGVALAVSITSSLVEP 134
NGT K + + N + + TG + W + C G S+T S + P
Sbjct: 610 NGTSEKNPTRIVALENGNTKWMDYLPRPVILVTGSIHFWSIACDDGSLHLYSLTGSRLLP 669
Query: 133 P 131
P
Sbjct: 670 P 670
>SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 343
Score = 27.1 bits (57), Expect = 2.7
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
Frame = +3
Query: 240 LSNSIEQFERTTPGTSMPSLEPVPLTVD---TRPTSKLNIMIKTSPKSPPRTEAEPHRRF 410
+S S + T PG +PS PV + D +P+ L+++ TS P T+ + F
Sbjct: 1 MSISNDSLASTVPGDELPSSYPV-FSSDFSYIKPSHVLDVVTVTSTAGPEATDDPSYSGF 59
Query: 411 EFPPADPCNAEP 446
N EP
Sbjct: 60 YSTVISTQNPEP 71
>SPBC4C3.12 |sep1||fork head transcription factor
Sep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 663
Score = 26.6 bits (56), Expect = 3.6
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = -1
Query: 526 GLSSTSSMNLCSANAHNNPKPPRAGFAGSALQGSAGGNSNLLCGSASVLG 377
G+SS S+ + N+P PP + A SA + N +L SA LG
Sbjct: 316 GVSSVVSVTSPLQSCTNSPSPPLSSPASSASPSESLRNESLGIKSAKSLG 365
>SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit
Bdp1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 507
Score = 26.2 bits (55), Expect = 4.8
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +3
Query: 492 EQRFMEEVEESPQNNLSISSRPFVKNEPLHSPAV-RDRDRHREYDIQAQS 638
EQ+FM+E++ N+ +S V + SPA + R +RE ++ +S
Sbjct: 120 EQQFMKELDLFFDENIPLSQLSAVSDGKADSPATKKSRRSYRESSLKRKS 169
>SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 775
Score = 26.2 bits (55), Expect = 4.8
Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
Frame = +3
Query: 222 LSGLELLSNSIEQFERTTPGTSMPSLEPVPLTVDTRPTSKLNIMIKTSPKSPPRTEAE-P 398
LS + L N I+ +T PSL P T+ T S L+ ++KT+ K +
Sbjct: 279 LSSAQKLFNGIKL---STDFIHKPSLSDYPQTISTFIKSSLSHLLKTAEKDNDFVFHDLV 335
Query: 399 HRRFEFPPADPCNAEPAKP 455
+ E P P A P P
Sbjct: 336 VKEVELPKISPLQALPPLP 354
>SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 891
Score = 25.8 bits (54), Expect = 6.3
Identities = 14/52 (26%), Positives = 25/52 (48%)
Frame = -1
Query: 544 MDRLFCGLSSTSSMNLCSANAHNNPKPPRAGFAGSALQGSAGGNSNLLCGSA 389
+D L+ L+ + S + + P P R+ F+G A G N +L+ S+
Sbjct: 685 LDSLYVLLNMRAKSTPNSTSFSSPPTPHRSPFSGQAFTGMGLSNYSLMSSSS 736
>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1154
Score = 25.8 bits (54), Expect = 6.3
Identities = 21/84 (25%), Positives = 30/84 (35%)
Frame = +3
Query: 306 VPLTVDTRPTSKLNIMIKTSPKSPPRTEAEPHRRFEFPPADPCNAEPAKPXXXXXXXXXX 485
+P VD+ S N+ KSP R P F PP+ P + +P
Sbjct: 319 LPDNVDSTEPSTPNVQ-----KSPNRLP--PVGNFSLPPSAPVREKRNRPAHSAQISRSI 371
Query: 486 XXEQRFMEEVEESPQNNLSISSRP 557
R + E P N+ S+ P
Sbjct: 372 SKTSRMYRQTAEEPLNSYSLHVYP 395
>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1018
Score = 25.4 bits (53), Expect = 8.4
Identities = 8/22 (36%), Positives = 16/22 (72%)
Frame = +3
Query: 525 PQNNLSISSRPFVKNEPLHSPA 590
P ++ S S++PF++ +H+PA
Sbjct: 859 PSSSTSQSNKPFIEKASMHAPA 880
>SPCC1753.03c |rec7||meiotic recombination protein Rec7
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 339
Score = 25.4 bits (53), Expect = 8.4
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 7/77 (9%)
Frame = +3
Query: 234 ELLSNS--IEQFERTTPGTSMPSLEPVPL---TVDTRPTSKLNIMIKTSPKSPPRTEAEP 398
E+ SN+ +++F T MP + T +PT N++I +SP +P R
Sbjct: 197 EIFSNTPPLKRFRGDAGMTQMPLRSDTSIESITASQQPTWDENVVITSSPFNPNRNAYSY 256
Query: 399 HRRFEFP--PADPCNAE 443
++P A P N++
Sbjct: 257 GANSQYPIIAATPLNSQ 273
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,831,993
Number of Sequences: 5004
Number of extensions: 59155
Number of successful extensions: 222
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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