Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0680
         (730 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    25   0.55 
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   6.8  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   6.8  
AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding prote...    21   9.0  
AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding prote...    21   9.0  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   9.0  

>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 25.4 bits (53), Expect = 0.55
 Identities = 12/50 (24%), Positives = 22/50 (44%)
 Frame = +3

Query: 105 DDTMDNLSSGGSTNELVIDTARATPVPQVTPQSARPPVDLSGLELLSNSI 254
           D T+DNL         + ++ R  P      +    P++LSG  L + ++
Sbjct: 369 DLTIDNLRKAKYLRACITESLRLIPTTTCIARILDEPIELSGYRLTAGTV 418


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 243 SNSIEQFERTTPGTSMPSLEPVP 311
           SNS + +ER +P T +  L   P
Sbjct: 40  SNSPDHYERFSPSTHLMDLSSPP 62


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -3

Query: 197 GRHLWYRSGSRSVYHQLISRASTA 126
           G H W     +   H+ +SR STA
Sbjct: 703 GSHSWEGDSFKVSKHEEVSRTSTA 726


>AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding protein
           ASP6 protein.
          Length = 146

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 261 IVQCCLKEVLIH*GPQVASRFG 196
           +V+ C KEV    G +VA +FG
Sbjct: 111 VVETCKKEVTSTEGCEVAWQFG 132


>AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding protein
           protein.
          Length = 120

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 261 IVQCCLKEVLIH*GPQVASRFG 196
           +V+ C KEV    G +VA +FG
Sbjct: 85  VVETCKKEVTSTEGCEVAWQFG 106


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 571 NLYTVLL*ETEIDTGNTI 624
           NLY + + ET I++GN I
Sbjct: 539 NLYAMKMNETYINSGNKI 556


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,567
Number of Sequences: 438
Number of extensions: 4339
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)