Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0679
         (791 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc...    27   2.3  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    27   4.1  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    26   5.4  
SPAC1952.17c ||SPAC890.01c|GTPase activating protein|Schizosacch...    26   5.4  
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom...    26   7.1  
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc...    26   7.1  
SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|...    25   9.4  

>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
           Prp11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1014

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 3   HPQPYIHKGNSTGRAPLHVHTALAAEHCPPQQRERSV 113
           H + Y+H+   TGRA    HT +A     P+Q + +V
Sbjct: 748 HMEDYVHRVGRTGRAG---HTGVAVTFITPEQEKYAV 781


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = +1

Query: 121 PTTAKPRASADGISKAPRPLSNILPSGGIRPNSNVSTQT 237
           PTT     S    S +P P S+   +  +  +SN  T T
Sbjct: 519 PTTVSTSGSVSSFSSSPSPTSSFSGTSALSSSSNEETTT 557


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = +3

Query: 3   HPQPYIHKGNSTGRAPLHVHTALAAEHCPPQQRERSVCDAY 125
           H  P IH+   TG AP+   T+ A+   P   R  S    Y
Sbjct: 796 HAVPPIHQIKQTGYAPVQPKTSQASSILPTVPRTTSYTSPY 836


>SPAC1952.17c ||SPAC890.01c|GTPase activating
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 619

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -2

Query: 679 GLTHGSKRNVFVAPLIWFVASQRWAESEYLVACPASFL 566
           G+ +    N  +APL + +A+    E+ YL  C A FL
Sbjct: 265 GIGYVQGMNEILAPLYYVLATDPTYENYYLCECDAFFL 302


>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 649

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 3/80 (3%)
 Frame = +1

Query: 7   PNPIFIRGTQPDAPPSMFIQHSPQNTVHHNS---VSVACATPTTAKPRASADGISKAPRP 177
           P+P  I    P+  P  FIQHSP    H +S   V++        +P ++    SK P  
Sbjct: 568 PSPAHIM--YPEGSPG-FIQHSPNGFTHGHSASPVNIGQKLDVPERPMSTPYTASKNPFS 624

Query: 178 LSNILPSGGIRPNSNVSTQT 237
              +     +  NS +ST++
Sbjct: 625 TRELAEPTDLARNS-ISTES 643


>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 781

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +1

Query: 97  SVSVACATPTTAKPRASADGISKAPRPLSNILPSGGIR 210
           S+S +   P+ AKP    +G  K P PLS   P+  IR
Sbjct: 225 SLSRSAELPSKAKPMEINNGYRKKPSPLS---PNSSIR 259


>SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 712

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = +1

Query: 1   LTPNPIFIRGTQPDAPPSMFIQHSPQNTVHHN 96
           L P   F+R    D PPS  +  S     HH+
Sbjct: 646 LRPRNFFLRNPALDVPPSKNVTTSEVKQAHHH 677


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.312    0.124    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,657,650
Number of Sequences: 5004
Number of extensions: 46720
Number of successful extensions: 127
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)