Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0679
         (791 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50768| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.5  
SB_57821| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.7  
SB_5499| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.5  
SB_12423| Best HMM Match : Glypican (HMM E-Value=1.00053e-42)          28   7.5  
SB_972| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   7.5  
SB_36131| Best HMM Match : His_leader (HMM E-Value=2.7e-10)            28   10.0 
SB_32414| Best HMM Match : Osteopontin (HMM E-Value=2.4)               28   10.0 

>SB_50768| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1069

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 23/95 (24%), Positives = 30/95 (31%)
 Frame = +1

Query: 31  TQPDAPPSMFIQHSPQNTVHHNSVSVACATPTTAKPRASADGISKAPRPLSNILPSGGIR 210
           TQP  P     + S    V     S+   T +    + S DG+  A  P     P   I 
Sbjct: 391 TQPGGPTVTTPKSSALTGVTARKPSMPGPTSSPGATQGSTDGVVSAKPPTKKTTPQSVIP 450

Query: 211 PNSNVSTQTXXXXXXXXXKQRGKPGVRSPAPANKQ 315
           P    +  T          Q    GV S  P  K+
Sbjct: 451 PGKTTAPTTKPPGSPAGSTQGPTDGVLSAKPPTKK 485


>SB_57821| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 941

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +3

Query: 330 DEQNAASDPTAETTIVSDELVRSDGADNERARQTGSEQE 446
           D++N  +    E     D LV+++  D ERA ++G+E +
Sbjct: 422 DDENVDNKKAEEKLKNGDHLVKTESKDAERAAESGNESD 460


>SB_5499| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 183

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 17/65 (26%), Positives = 25/65 (38%), Gaps = 3/65 (4%)
 Frame = +1

Query: 46  PPSMFIQHSPQNTVHHNSVSVACATPTTAKPRASADGISKAPR---PLSNILPSGGIRPN 216
           PP +  + + Q    H +++  C T    KPR S       P    P   +L SG +   
Sbjct: 2   PPRIVSEPTDQVATIHQNITFVCDTQGVPKPRVSWQNSQGRPADRDPRITVLQSGALHIR 61

Query: 217 SNVST 231
             V T
Sbjct: 62  GGVPT 66


>SB_12423| Best HMM Match : Glypican (HMM E-Value=1.00053e-42)
          Length = 737

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 61  IQHSPQNTVHHNSVSVACATPTTAKPRASADG 156
           + +  +NTV    +   C TPT +K + S DG
Sbjct: 489 MNYQEKNTVVSQKIFSGCGTPTLSKSKRSTDG 520


>SB_972| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 378

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +3

Query: 93  QQRERSVCDAYYSKAACFCRWDFEGS 170
           QQRERS  D  +S+   FC+  FEG+
Sbjct: 140 QQRERS--DTSFSRTCLFCKQHFEGN 163


>SB_36131| Best HMM Match : His_leader (HMM E-Value=2.7e-10)
          Length = 416

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = +1

Query: 49  PSMFIQHSPQNTVHHNSVSVACATPTTAKPRASADGISKAPRPLSNILPS 198
           PS  I H P + +HH S  +   + +++   +S    S +   LS+ L S
Sbjct: 362 PSSIIHHHPSSIIHHPSSIIHHPSSSSSSLSSSLSSSSSSSSSLSSSLSS 411


>SB_32414| Best HMM Match : Osteopontin (HMM E-Value=2.4)
          Length = 777

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 17/43 (39%), Positives = 20/43 (46%)
 Frame = +1

Query: 70  SPQNTVHHNSVSVACATPTTAKPRASADGISKAPRPLSNILPS 198
           S +NT H  + S      T A    S  GISKAP  L   LP+
Sbjct: 604 SDENTKHQAADSTISVDDTYANNGNSEGGISKAPCKLRQHLPA 646


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.312    0.124    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,536,928
Number of Sequences: 59808
Number of extensions: 412550
Number of successful extensions: 1058
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1057
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2179815638
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)