Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0679
         (791 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g20130.1 68417.m02945 ribulose-1,5 bisphosphate carboxylase/o...    34   0.12 
At5g17300.1 68418.m02026 myb family transcription factor similar...    31   0.66 
At5g53040.1 68418.m06588 RWP-RK domain-containing protein contai...    29   3.5  
At3g60240.1 68416.m06732 MIF4G domain-containing protein / MA3 d...    29   3.5  
At5g09840.1 68418.m01138 expressed protein contains Pfam profile...    29   4.7  
At3g27550.1 68416.m03443 group II intron splicing factor CRS1-re...    28   8.2  

>At4g20130.1 68417.m02945 ribulose-1,5 bisphosphate
           carboxylase/oxygenase large subunit
           N-methyltransferase-related contains weak similarity to
           Swiss-Prot:P94026 ribulose-1,5 bisphosphate
           carboxylase/oxygenase large subunit N-
           methyltransferase, chloroplast precursor (Ribulose-
           bisphosphate-carboxylase]-lysine N-methyltransferase,
           RuBisCO methyltransferase, RuBisco LSMT, rbcMT)
           [Nicotiana tabacum]
          Length = 483

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
 Frame = +1

Query: 94  NSVSVACATPT-TAKPRASADGISKAPRPLSNIL--PSGGIRPNSNVSTQT 237
           +SVS+   T T  +KP+   +GI  APRP SN+L     G+RP    S +T
Sbjct: 3   SSVSLQFLTNTFISKPQGFCNGIVSAPRPRSNLLRDRQNGVRPIKVASIET 53


>At5g17300.1 68418.m02026 myb family transcription factor similar to
           CCA1 [Arabidopsis thaliana] GI:4090569; contains Pfam
           profile PF00249: Myb-like DNA-binding domain
          Length = 387

 Score = 31.5 bits (68), Expect = 0.66
 Identities = 21/45 (46%), Positives = 28/45 (62%)
 Frame = -2

Query: 421 ARSLSAPSDRTSSSLTIVVSAVGSDAAFCSSDWPHPVY*LEPETS 287
           +RS+S PS+R + S T V+S VGS+ A CS D   P   L P +S
Sbjct: 145 SRSVS-PSERDTQSPTSVLSTVGSE-ALCSLDSSSPNRSLSPVSS 187


>At5g53040.1 68418.m06588 RWP-RK domain-containing protein contains
           Pfam profile: PF02042 RWP-RK domain
          Length = 256

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 17/61 (27%), Positives = 31/61 (50%)
 Frame = +1

Query: 52  SMFIQHSPQNTVHHNSVSVACATPTTAKPRASADGISKAPRPLSNILPSGGIRPNSNVST 231
           S+F+Q   QN++HH     +       +P +  D + K P PL ++L    ++PN+ +  
Sbjct: 18  SLFLQQMDQNSLHHLD---SPKIENEYEPDSLYDMLDKLP-PLDSLLDMEDLKPNAGLHF 73

Query: 232 Q 234
           Q
Sbjct: 74  Q 74


>At3g60240.1 68416.m06732 MIF4G domain-containing protein / MA3
           domain-containing protein similar to eukaryotic protein
           synthesis initiation factor [Homo sapiens] GI:3941724;
           contains Pfam profiles PF02854: MIF4G domain, PF02847:
           MA3 domain
          Length = 1544

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 26/101 (25%), Positives = 39/101 (38%), Gaps = 9/101 (8%)
 Frame = +1

Query: 7   PNPIFIR-GTQPDAPPSMFIQHSPQNTVHHNSV-----SVACATPTTAK--PRASADGIS 162
           P P+ +  G  P  PP +F Q  P + +HH  +         ATP  A+  P+    G+ 
Sbjct: 112 PMPMALSMGNTPQIPPQVFYQGHPPHPMHHQGMMHQAQGHGFATPMGAQIHPQLGHVGVG 171

Query: 163 KAPR-PLSNILPSGGIRPNSNVSTQTXXXXXXXXXKQRGKP 282
            +P+ P       GG R  + V              +RG P
Sbjct: 172 LSPQYPQQQGGKYGGARKTTPVKITHPDTHEELRLDRRGDP 212


>At5g09840.1 68418.m01138 expressed protein contains Pfam profile
           PF04396: Protein of unknown function, DUF537
          Length = 924

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = -1

Query: 740 LVSSECFARSVLCSAARLLYRLDPWLQEECI 648
           L++S+  A  VLCSAA +++  D  ++ EC+
Sbjct: 192 LLASKSSAPGVLCSAASIMWDWDALIKGECV 222


>At3g27550.1 68416.m03443 group II intron splicing factor
           CRS1-related contains weak similarity to CRS1 [Zea mays]
           gi|9837550|gb|AAG00595
          Length = 491

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/45 (26%), Positives = 25/45 (55%)
 Frame = +1

Query: 34  QPDAPPSMFIQHSPQNTVHHNSVSVACATPTTAKPRASADGISKA 168
           + DAPP+ +I  S  +   + +VS + +  +  +  +S DGI+ +
Sbjct: 432 EEDAPPANYISSSDDDEDENRTVSASSSKQSRFRNNSSRDGINNS 476


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.312    0.124    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,712,514
Number of Sequences: 28952
Number of extensions: 274854
Number of successful extensions: 590
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 589
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1785055200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)