Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0677
         (576 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual     29   0.64 
SPAC31G5.07 |||conjugation protein |Schizosaccharomyces pombe|ch...    29   0.64 
SPAC5D6.13 ||SPAPJ735.02c|Golgi phosphoprotein 3 family|Schizosa...    27   2.6  
SPBC2F12.10 |||mitochondrial ribosomal protein subunit L35|Schiz...    26   3.4  
SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4 |Schi...    26   4.5  

>SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 435

 Score = 28.7 bits (61), Expect = 0.64
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -1

Query: 69  IAHVNIREKWAYVGY*IGDIIFE 1
           IAH+N+RE+W    Y IG +I +
Sbjct: 148 IAHMNLREEWLPYKYIIGKVILD 170


>SPAC31G5.07 |||conjugation protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 234

 Score = 28.7 bits (61), Expect = 0.64
 Identities = 19/71 (26%), Positives = 38/71 (53%)
 Frame = +3

Query: 330 NICYVYVL*FSYCICYFSYVLFVLHTLITFYYYSHYPLAGLLEEISQRNKQCLCT*FSYY 509
           N  + +++ FS+C+C  S+++ V+ +L         PL G LE +  RN +   + FS++
Sbjct: 93  NEVHPWMIVFSFCVCGVSFLMGVVSSL---------PLIGRLEFL--RNIRISLSFFSFF 141

Query: 510 SVLCLVFCVYI 542
           S+L      ++
Sbjct: 142 SILVTALFAHV 152


>SPAC5D6.13 ||SPAPJ735.02c|Golgi phosphoprotein 3
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -2

Query: 257 LFDLVFKNRNRLANSDVSRQRIPQSDRV 174
           L +L F+ + R+   DV+R+R P +DRV
Sbjct: 94  LMELAFRGKLRM-QKDVNRKRFPLADRV 120


>SPBC2F12.10 |||mitochondrial ribosomal protein subunit
           L35|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 370

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 14/59 (23%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = +3

Query: 138 HKTNFYSHSFTVHAV-RLWNSLPADIRVCKSVSVFKYKVKQFYLSSTE*SWFYTLRIYE 311
           H  N+ +  FT+  + R+W  +P    VC++ S++    +  Y SS +    Y+ ++++
Sbjct: 51  HTVNYLA--FTIARMKRVWPRIPTISNVCRARSIYSAAQENAYRSSVKLIQEYSEKVHK 107


>SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 289

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
 Frame = +3

Query: 282 SWFYTLRIYECYCVTYNICYV--YVL*FSYCICYFSYVLFVLHTLIT 416
           S FY ++    Y       Y   YV+ F +C  +F Y LF   T+ T
Sbjct: 209 SCFYLVQYIVAYIAMLLAMYYNGYVILFLFCGTFFGYFLFGADTIST 255


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,273,260
Number of Sequences: 5004
Number of extensions: 47129
Number of successful extensions: 121
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)