Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0677
         (576 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0088 + 22303074-22303253,22303401-22303478                       30   1.1  
02_01_0366 - 2631738-2632109                                           28   4.6  
12_02_1085 - 25935688-25935948,25936589-25936657,25937244-259373...    28   6.1  

>05_05_0088 + 22303074-22303253,22303401-22303478
          Length = 85

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 18/42 (42%), Positives = 21/42 (50%)
 Frame = +3

Query: 21  FNILHKPTSPLYLRERFSFIRSPDAPCRSNQRSVLLFPSHKT 146
           F  +HKPT   YL+ R+  I S   P      SV L  SHKT
Sbjct: 27  FQSVHKPT---YLKGRYDAIASVAIPLALAASSVFLVDSHKT 65


>02_01_0366 - 2631738-2632109
          Length = 123

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = -3

Query: 139 WEGNNKTERWLDLQGASGERMKENRSRKYKGEVGLCRILNRRHNIR 2
           W       RW  L+  +G R     +R+ KGEV L  +L+  H +R
Sbjct: 37  WRARRGDRRWRRLELKAGWREGGTSARREKGEVAL--VLSCHHRLR 80


>12_02_1085 -
           25935688-25935948,25936589-25936657,25937244-25937315,
           25937693-25937791,25937927-25938007,25938099-25938586,
           25938728-25938857,25939994-25940239
          Length = 481

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +1

Query: 295 LFAYTSVTVLLIIFAMCMCYNSHIVFVILVMC-YLFY 402
           ++ Y  +T +L+I   CMC   H  FVI V+  Y  Y
Sbjct: 111 MYGYFWITGMLLIAGGCMCSLKHARFVIPVLAMYAVY 147


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,457,662
Number of Sequences: 37544
Number of extensions: 258763
Number of successful extensions: 629
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)