Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0677
         (576 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF457558-1|AAL68788.1|   56|Anopheles gambiae hypothetical prote...    24   3.1  
AF364132-1|AAL35508.1|  397|Anopheles gambiae putative odorant r...    24   4.1  
U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse tra...    23   7.1  

>AF457558-1|AAL68788.1|   56|Anopheles gambiae hypothetical protein
           11 protein.
          Length = 56

 Score = 24.2 bits (50), Expect = 3.1
 Identities = 9/24 (37%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +1

Query: 340 MCMCYNSHIVFVILVMCYLFY-TH 408
           MC+ + + I  ++L++C  FY TH
Sbjct: 1   MCIFFQAGIKLLVLLICLFFYHTH 24


>AF364132-1|AAL35508.1|  397|Anopheles gambiae putative odorant
           receptor Or4 protein.
          Length = 397

 Score = 23.8 bits (49), Expect = 4.1
 Identities = 16/52 (30%), Positives = 28/52 (53%)
 Frame = +1

Query: 61  VSDSLSFVLLMLPAGPTNVLFCYSLPTKPISILTPLLCTRSDCGIRCRLTSE 216
           V D ++FVL+MLP     V+ C  +    + ++T + C+   C +  R+T E
Sbjct: 183 VEDYITFVLIMLPV----VVMCGYVCN--LKVMT-ICCSIGHCTLYTRMTIE 227


>U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse
           transcriptase protein.
          Length = 1049

 Score = 23.0 bits (47), Expect = 7.1
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +3

Query: 294 TLRIYECYCVTYNIC 338
           T+ I +CYCV+++ C
Sbjct: 809 TICIEKCYCVSFSRC 823


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 590,653
Number of Sequences: 2352
Number of extensions: 12364
Number of successful extensions: 18
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 54665910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)