Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0677
         (576 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58760-8|AAY55858.2|  216|Caenorhabditis elegans Hypothetical pr...    36   0.027
AF016419-9|AAG24054.1| 2025|Caenorhabditis elegans Hypothetical ...    30   1.0  
Z48178-3|CAC42246.1| 1553|Caenorhabditis elegans Hypothetical pr...    30   1.4  
Z48178-2|CAA88201.1| 1551|Caenorhabditis elegans Hypothetical pr...    30   1.4  
U70858-7|AAB09177.1| 1484|Caenorhabditis elegans Hypothetical pr...    30   1.4  
AF273840-1|AAG15187.1|  553|Caenorhabditis elegans sex-1 protein.      28   4.1  
AF049869-1|AAC77795.1|  556|Caenorhabditis elegans SEX-1 protein.      28   4.1  
Z81504-4|CAB04118.1|  314|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z81504-3|CAB04117.2|  349|Caenorhabditis elegans Hypothetical pr...    27   9.5  

>U58760-8|AAY55858.2|  216|Caenorhabditis elegans Hypothetical
           protein C27A2.7 protein.
          Length = 216

 Score = 35.5 bits (78), Expect = 0.027
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +3

Query: 99  CRSNQRSVLLFPSHKTNFYSHSFTVHAVRLWNSLPADIRVCKSV 230
           C S++R+      HK  ++S++F V+   LW   P D RV K V
Sbjct: 90  CNSDERTPFQLCEHKAIYHSYNFCVYKCILWRFSPQDQRVWKCV 133


>AF016419-9|AAG24054.1| 2025|Caenorhabditis elegans Hypothetical
            protein F07G11.9 protein.
          Length = 2025

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -1

Query: 141  CGKGITKQNVGWTCREHQENE*KRIAHV 58
            CGK I     GW  RE  EN+ K++ HV
Sbjct: 1491 CGKRIVGYYTGWGDREITENQLKKLTHV 1518


>Z48178-3|CAC42246.1| 1553|Caenorhabditis elegans Hypothetical
           protein C05C10.2b protein.
          Length = 1553

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 84  SPDAPCRSNQRSVLLFPSHKTNFYSHSFTVHAV 182
           SPDAPC+     V+LFP H+       FT + +
Sbjct: 366 SPDAPCQWMASKVVLFPRHEPVNVQFKFTCNGM 398


>Z48178-2|CAA88201.1| 1551|Caenorhabditis elegans Hypothetical
           protein C05C10.2a protein.
          Length = 1551

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 84  SPDAPCRSNQRSVLLFPSHKTNFYSHSFTVHAV 182
           SPDAPC+     V+LFP H+       FT + +
Sbjct: 366 SPDAPCQWMASKVVLFPRHEPVNVQFKFTCNGM 398


>U70858-7|AAB09177.1| 1484|Caenorhabditis elegans Hypothetical protein
            T01C4.1 protein.
          Length = 1484

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -1

Query: 141  CGKGITKQNVGWTCREHQENE*KRIAHV 58
            CGK I     GW  RE  EN+ K++ HV
Sbjct: 954  CGKRIVGYYTGWGEREITENQLKKLTHV 981


>AF273840-1|AAG15187.1|  553|Caenorhabditis elegans sex-1 protein.
          Length = 553

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 24  NILHKPTSPLYLRERFSFIRSPDAPCRSNQRSVLLFPSHKTNFYSHSFTVHAVRLWN 194
           N LHK    + LRE  SF+  P       Q S L  P +  N  +H   + ++R  N
Sbjct: 461 NELHKQQLNI-LRENLSFLNLPPLVVEMFQLSTLPLPVNHNNQENHILLLQSIRALN 516


>AF049869-1|AAC77795.1|  556|Caenorhabditis elegans SEX-1 protein.
          Length = 556

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 24  NILHKPTSPLYLRERFSFIRSPDAPCRSNQRSVLLFPSHKTNFYSHSFTVHAVRLWN 194
           N LHK    + LRE  SF+  P       Q S L  P +  N  +H   + ++R  N
Sbjct: 464 NELHKQQLNI-LRENLSFLNLPPLVVEMFQLSTLPLPVNHNNQENHILLLQSIRALN 519


>Z81504-4|CAB04118.1|  314|Caenorhabditis elegans Hypothetical
           protein F15H9.4 protein.
          Length = 314

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = +3

Query: 348 VL*FSYCICYFSYVLFVLHTLITFYY--YSHYPLAG 449
           +L + YC+CY  +  F+    ++F    Y  +PL G
Sbjct: 44  MLGYKYCLCYLQFASFLTEMHMSFICPGYYFFPLTG 79


>Z81504-3|CAB04117.2|  349|Caenorhabditis elegans Hypothetical
           protein F15H9.3 protein.
          Length = 349

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = +3

Query: 348 VL*FSYCICYFSYVLFVLHTLITFYY--YSHYPLAG 449
           +L + YC+CY  +  F+    ++F    Y  +PL G
Sbjct: 44  MLGYKYCLCYLQFASFLTEMHMSFICPGYYFFPLTG 79


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,628,609
Number of Sequences: 27780
Number of extensions: 268881
Number of successful extensions: 803
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)