Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0677
         (576 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g14590.1 68416.m01847 C2 domain-containing protein low simila...    30   1.3  
At2g46640.1 68415.m05818 hypothetical protein  and genefinder; e...    29   2.9  
At2g15900.1 68415.m01822 phox (PX) domain-containing protein wea...    29   2.9  
At1g35330.1 68414.m04379 zinc finger (C3HC4-type RING finger) fa...    28   5.1  
At5g23990.1 68418.m02819 ferric-chelate reductase, putative simi...    27   9.0  
At3g62160.1 68416.m06984 transferase family protein low similari...    27   9.0  
At1g53460.1 68414.m06060 expressed protein                             27   9.0  

>At3g14590.1 68416.m01847 C2 domain-containing protein low
           similarity to SP|Q16974 Calcium-dependent protein kinase
           C (EC 2.7.1.-) {Aplysia californica}; contains Pfam
           profile PF00168: C2 domain
          Length = 737

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 313 VTVLLIIFAMCMCYNSHIVFVILVMCYLFYTH 408
           V VLL+++ +     SH VF +L + YL+  H
Sbjct: 10  VIVLLLLWVLSYLNRSHAVFYVLSLVYLYLVH 41


>At2g46640.1 68415.m05818 hypothetical protein  and genefinder;
           expression supported by MPSS
          Length = 310

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = +1

Query: 298 FAYTSVTVLLIIFAMCMCYNSHIVFVILVMCYLFYTH 408
           F  T++T LL+ F   M    HIVF   V+C+L YT+
Sbjct: 274 FLLTNITKLLV-FVPVM----HIVFYYYVICFLIYTY 305


>At2g15900.1 68415.m01822 phox (PX) domain-containing protein weak
           similarity to SP|Q9Y5W8 Sorting nexin 13 {Homo sapiens};
           contains Pfam profiles PF00787: PX domain, PF02194: PXA
           domain
          Length = 1009

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +3

Query: 363 YCICYFSYVLFVLHTLITFYYYSHYPLAGLL 455
           +C+C FS   F+ HT I  Y++ + P+A L+
Sbjct: 21  WCLCIFSVTYFLTHTSI--YWWLNLPIAILI 49


>At1g35330.1 68414.m04379 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 327

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +1

Query: 244 TRSNNFIYHQPNDHGSILFAYTSVTVLLIIFAMCMCY 354
           T +  +I  +PN   +++ A    T+L  + A C+CY
Sbjct: 32  TTAPPYIAQRPNQVPAVIIAMLMFTLLFSMLACCVCY 68


>At5g23990.1 68418.m02819 ferric-chelate reductase, putative similar
           to ferric-chelate reductase (FRO1) [Pisum sativum]
           GI:15341529; contains Pfam profile PF01794: Ferric
           reductase like transmembrane component
          Length = 657

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
 Frame = +1

Query: 151 SILTPLLCTRSDCGIRCRLTSEFASLFLFLNTRSNNFIYHQPNDHGSIL-FAYTSVTVLL 327
           S ++P+L   +   +   + S F    L +   +  +IY   ++ GSI  F Y    VL 
Sbjct: 473 SPISPVLGPNNFLWLGVVILSSFVMFLLLIGIVTRYYIYPVDHNTGSIYNFTYR---VLW 529

Query: 328 IIFAMCMCY--NSHIVFV 375
           ++F  C+C   +S I+F+
Sbjct: 530 VMFLGCVCIFISSSIIFL 547


>At3g62160.1 68416.m06984 transferase family protein low similarity
           to Taxus cuspidata transferases: 10-deacetylbaccatin
           III-10-O-acetyl transferase GI:6746554, taxadienol
           acetyl transferase GI:6978038,
           2-debenzoyl-7,13-diacetylbaccatin III-2-O-benzoyl
           transferase GI:11559716; contains Pfam profile PF02458
           transferase family
          Length = 428

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +3

Query: 429 SHYPLAGLLEEISQRNKQCLCT 494
           S+YPL+G L+E++Q   Q  CT
Sbjct: 65  SYYPLSGRLKELNQGKLQIDCT 86


>At1g53460.1 68414.m06060 expressed protein
          Length = 314

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = -3

Query: 136 EGNNKTERWLDLQGASGERMKEN--RSRKYKGEVGLCRILNRRHNI 5
           EGN    + L+L+    E  K    R +K KGEV +     +RHN+
Sbjct: 67  EGNELKRKLLELERKLIELKKSEPVRKKKQKGEVVISEQNEKRHNL 112


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,442,423
Number of Sequences: 28952
Number of extensions: 228874
Number of successful extensions: 595
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1121903184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)