Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0675
         (699 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           26   0.34 
U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    21   7.3  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        21   7.3  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   9.7  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   9.7  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   9.7  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   9.7  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   9.7  

>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 25.8 bits (54), Expect = 0.34
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +3

Query: 570 NDAGHATRYSDSAHRWDATNHINGATNTSSWSHGSSRYNSR 692
           N+  H    ++S + W   N  +   NTSS + G +  NS+
Sbjct: 373 NNRWHNNNGNNSNNHWRKNNPNDNRNNTSSRAQGETSRNSK 413


>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 6/20 (30%), Positives = 13/20 (65%)
 Frame = -3

Query: 370 VVSAVGSDAAFCSSDWPHPV 311
           +V+ +G DA +C  +  +P+
Sbjct: 289 IVAPLGYDAYYCGGECEYPI 308


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +1

Query: 1   LTPNPIFIRGTQPDAPPSMFIQHSP 75
           L P+P+    T P+ P +  I H+P
Sbjct: 322 LYPSPVPGHSTSPNLPLTHNIAHNP 346


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = -3

Query: 451 GGSCSEPVCLARSLSAPSDRTSSSLTIVVSAVGSDAAFCSSD 326
           G   ++PV  AR   AP      + T+  SAVG    +  +D
Sbjct: 515 GRLVAKPVADARDAPAPFLLKRENYTLPASAVGIAWLYVDND 556


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 9/30 (30%), Positives = 13/30 (43%)
 Frame = -3

Query: 667 WLQEDVFVAPLIWFVASQRWAESEYLVACP 578
           WL    ++   IW    +R A +E L   P
Sbjct: 470 WLLSQTWITLHIWTPKCERLARTEKLFVTP 499


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 9/30 (30%), Positives = 13/30 (43%)
 Frame = -3

Query: 667 WLQEDVFVAPLIWFVASQRWAESEYLVACP 578
           WL    ++   IW    +R A +E L   P
Sbjct: 470 WLLSQTWITLHIWTPKCERLARTEKLFVTP 499


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 9/30 (30%), Positives = 13/30 (43%)
 Frame = -3

Query: 667 WLQEDVFVAPLIWFVASQRWAESEYLVACP 578
           WL    ++   IW    +R A +E L   P
Sbjct: 470 WLLSQTWITLHIWTPKCERLARTEKLFVTP 499


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 9/30 (30%), Positives = 13/30 (43%)
 Frame = -3

Query: 667 WLQEDVFVAPLIWFVASQRWAESEYLVACP 578
           WL    ++   IW    +R A +E L   P
Sbjct: 470 WLLSQTWITLHIWTPKCERLARTEKLFVTP 499


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.312    0.126    0.363 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,981
Number of Sequences: 336
Number of extensions: 2664
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)