Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0674
         (651 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-...    38   0.21 
UniRef50_A3J1D2 Cluster: Putative uncharacterized protein; n=1; ...    34   2.6  

>UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-like
            protein; n=25; Arthropoda|Rep: Endonuclease and reverse
            transcriptase-like protein - Bombyx mori (Silk moth)
          Length = 986

 Score = 37.9 bits (84), Expect = 0.21
 Identities = 17/18 (94%), Positives = 17/18 (94%)
 Frame = +1

Query: 526  GRQRLGSARGIAEVHGRR 579
            GRQRLGSA GIAEVHGRR
Sbjct: 969  GRQRLGSAPGIAEVHGRR 986


>UniRef50_A3J1D2 Cluster: Putative uncharacterized protein; n=1;
           Flavobacteria bacterium BAL38|Rep: Putative
           uncharacterized protein - Flavobacteria bacterium BAL38
          Length = 563

 Score = 34.3 bits (75), Expect = 2.6
 Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 2/95 (2%)
 Frame = -1

Query: 567 DFSNATGRAKPLPTEMSTYRQS*QERVKNTKHIIMSRFAYFKACTC--RLSNRVDTLCTA 394
           DFSN +   K  P+ + ++ +S  + V+NT  I+ S  + ++A T    +  R+D  C +
Sbjct: 401 DFSNYSELVKTNPSHIVSFHESYDDAVQNTNSILNS--SNYEALTTPKEIFIRIDNGCFS 458

Query: 393 VFYLHRSILQRLCPPQFHHYVSVSKYFRYPTIVTE 289
           +      +L   CPP  ++ VS +  F   T   E
Sbjct: 459 ITSFF--LLTENCPPTVYNAVSPNGDFSNDTFFIE 491


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 586,291,603
Number of Sequences: 1657284
Number of extensions: 10645322
Number of successful extensions: 26246
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 25378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26239
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 48760335122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)