Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0674
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.16 |||DUF59 family protein|Schizosaccharomyces pombe|chr...    27   3.1  
SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce...    25   7.2  
SPCC13B11.01 |adh1|adh|alcohol dehydrogenase Adh1|Schizosaccharo...    25   9.5  

>SPAC144.16 |||DUF59 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 179

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -1

Query: 408 TLCTAVFYLHRSILQRLCPPQFHHYVSVSK 319
           ++CT +    R  L+R  PP+FH  V V K
Sbjct: 110 SMCTLIGLCIRVRLERCLPPRFHVDVKVKK 139


>SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 715

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -1

Query: 579 PSPMDFSNATGRAKPLPTEMSTYRQS*QERVKNT 478
           PS + +++AT + KP P  M+T   +     KNT
Sbjct: 11  PSFVQYTHATDKLKPAPHGMNTRGNNLSSMSKNT 44


>SPCC13B11.01 |adh1|adh|alcohol dehydrogenase
           Adh1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 350

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -2

Query: 632 YCLCRQTSIRPHLMVSGY 579
           YC+  + +I PH+ +SGY
Sbjct: 105 YCMKAEETICPHIQLSGY 122


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,500,267
Number of Sequences: 5004
Number of extensions: 46698
Number of successful extensions: 100
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)