Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0674
         (651 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0499 + 21461608-21463427,21463517-21463627,21463867-214641...    28   5.6  
09_04_0695 - 19547101-19548010,19548089-19548587,19549461-195497...    27   9.8  
06_03_0404 - 20460555-20462135                                         27   9.8  

>06_03_0499 + 21461608-21463427,21463517-21463627,21463867-21464143,
            21464265-21464353,21464508-21464595,21464698-21464907,
            21464985-21465110,21465429-21465620,21466532-21467188
          Length = 1189

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -1

Query: 414  VDTLCTAVFYLHRSILQRLCPPQFHHYVSVSKYFR 310
            V   C   + +H S  QRLC P  HH +   KY +
Sbjct: 1104 VTAACNMPYLIHISY-QRLCNPLDHHVIQEIKYLK 1137


>09_04_0695 -
           19547101-19548010,19548089-19548587,19549461-19549728,
           19551025-19551687,19551849-19552060,19552203-19552593,
           19552659-19553107,19553454-19553790
          Length = 1242

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -1

Query: 609 HTAPPDGEWLPSPMDFSNATGRAKPL 532
           H APP  + +P+P+ F   TG   P+
Sbjct: 151 HPAPPSKQEIPNPLAFPPLTGHKAPV 176


>06_03_0404 - 20460555-20462135
          Length = 526

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +2

Query: 512 YVLISVGSGLALPVALLKSMGDGNHSPSGG 601
           Y +    +GLA P  L  ++G G H   GG
Sbjct: 158 YAVAKADAGLAFPAGLCPTIGVGGHFSGGG 187


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,477,689
Number of Sequences: 37544
Number of extensions: 289367
Number of successful extensions: 693
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)