Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0674
         (651 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56741| Best HMM Match : 7tm_1 (HMM E-Value=7.2e-07)                 31   1.1  
SB_14988| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-08)                 29   2.5  
SB_44630| Best HMM Match : HECT (HMM E-Value=0)                        29   4.3  
SB_3188| Best HMM Match : Hyd_WA (HMM E-Value=2e-13)                   29   4.3  
SB_4836| Best HMM Match : 7tm_1 (HMM E-Value=1e-37)                    28   5.7  
SB_47703| Best HMM Match : GIY-YIG (HMM E-Value=0.56)                  28   7.6  
SB_46172| Best HMM Match : Peptidase_C54 (HMM E-Value=1)               28   7.6  
SB_44193| Best HMM Match : 7tm_1 (HMM E-Value=4.4e-12)                 28   7.6  

>SB_56741| Best HMM Match : 7tm_1 (HMM E-Value=7.2e-07)
          Length = 276

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 19/56 (33%), Positives = 28/56 (50%)
 Frame = -1

Query: 450 YFKACTCRLSNRVDTLCTAVFYLHRSILQRLCPPQFHHYVSVSKYFRYPTIVTENR 283
           Y K C       +D LC+  ++   S L  LC      Y+S+++  RY TIVT +R
Sbjct: 117 YGKLCRTNAKLFID-LCS--YFTLTSALTLLCLITIDRYISITRPLRYHTIVTMDR 169


>SB_14988| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-08)
          Length = 619

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -1

Query: 336 YVSVSKYFRYPTIVTENR 283
           Y+++ K FRYPTIVT  R
Sbjct: 439 YIAMKKAFRYPTIVTNER 456


>SB_44630| Best HMM Match : HECT (HMM E-Value=0)
          Length = 1003

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -3

Query: 403 VYCGVLPS*INPSETVSTTIPSLCECIEIF 314
           V+CG L S ++PS++  + +  +C+ I IF
Sbjct: 521 VFCGFLGSHVHPSQSSESHLMEICKVIGIF 550


>SB_3188| Best HMM Match : Hyd_WA (HMM E-Value=2e-13)
          Length = 1389

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +1

Query: 433  CARFEISKPRHNYMFSVFNTLLLALPVCTHFGR 531
            C RF  S    N +F + NT L   P CT FG+
Sbjct: 1335 CQRFASSIKSENPLFPIINT-LTPQPACTGFGK 1366


>SB_4836| Best HMM Match : 7tm_1 (HMM E-Value=1e-37)
          Length = 338

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 360 LCPPQFHHYVSVSKYFRYPTIVTENR 283
           +C      Y++VS+ FRY TIVT  R
Sbjct: 104 ICALMVDRYIAVSRAFRYRTIVTSFR 129


>SB_47703| Best HMM Match : GIY-YIG (HMM E-Value=0.56)
          Length = 640

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
 Frame = +3

Query: 261 LTLMNVRHDSLLRSLDI*NISIH-SHNDGI 347
           LTL N+  DSLL +LD+ ++  +  HNDGI
Sbjct: 166 LTLSNLPTDSLLVTLDVSSLYTNIPHNDGI 195


>SB_46172| Best HMM Match : Peptidase_C54 (HMM E-Value=1)
          Length = 417

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
 Frame = +3

Query: 261 LTLMNVRHDSLLRSLDI*NISIH-SHNDGI 347
           LTL N+  DSLL +LD+ ++  +  HNDGI
Sbjct: 123 LTLSNLPTDSLLVTLDVSSLYTNIPHNDGI 152


>SB_44193| Best HMM Match : 7tm_1 (HMM E-Value=4.4e-12)
          Length = 863

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = -1

Query: 432 CRLSNRVDTLCTAVFYLHRSILQRLCPPQFHHYVSVSKYFRYPTIVTENR 283
           CR   ++     A+F L  S L  LC      Y+S+++  RY  IVT+ R
Sbjct: 184 CRTDGKIFIDICAMFSL-TSGLTSLCLITVDRYISITRPLRYFAIVTKRR 232


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,400,887
Number of Sequences: 59808
Number of extensions: 343235
Number of successful extensions: 835
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)