Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0674
         (651 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014296-560|AAN11529.1| 1035|Drosophila melanogaster CG14955-PB...    29   5.5  
AE014296-559|AAF47715.2|  938|Drosophila melanogaster CG14955-PA...    29   5.5  

>AE014296-560|AAN11529.1| 1035|Drosophila melanogaster CG14955-PB,
           isoform B protein.
          Length = 1035

 Score = 29.1 bits (62), Expect = 5.5
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +1

Query: 448 ISKPRHNYMF--SVFNTLLLALPVCTHFGRQRLGSAR 552
           I+KP +   F   +F++LLL    CTHF R RL S +
Sbjct: 680 IAKPMNAIWFWLLLFSSLLLPTICCTHFLRSRLNSLK 716


>AE014296-559|AAF47715.2|  938|Drosophila melanogaster CG14955-PA,
           isoform A protein.
          Length = 938

 Score = 29.1 bits (62), Expect = 5.5
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +1

Query: 448 ISKPRHNYMF--SVFNTLLLALPVCTHFGRQRLGSAR 552
           I+KP +   F   +F++LLL    CTHF R RL S +
Sbjct: 583 IAKPMNAIWFWLLLFSSLLLPTICCTHFLRSRLNSLK 619


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,656,030
Number of Sequences: 53049
Number of extensions: 507314
Number of successful extensions: 1467
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1467
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2765538900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)