Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0674
         (651 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29536-5|AAA68794.1|  246|Caenorhabditis elegans Hypothetical pr...    29   2.2  
AF003137-3|AAB93640.1|  625|Caenorhabditis elegans Hypothetical ...    28   6.6  
AF304125-1|AAG50238.1|  542|Caenorhabditis elegans 1D304 protein.      27   8.7  
AC024201-8|AAF36020.1|  542|Caenorhabditis elegans Hypothetical ...    27   8.7  

>U29536-5|AAA68794.1|  246|Caenorhabditis elegans Hypothetical
           protein F45E12.1 protein.
          Length = 246

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = +3

Query: 237 IILSVLVNLTLMNVRHDSLLRSLDI*NISIHSHNDGIVVDTVSEG 371
           I +S L    L+ V+   L+  LD     IHSH+DG++  TV  G
Sbjct: 42  IPMSPLTTHRLLTVKRKILVLDLD--ETLIHSHHDGVLRQTVKPG 84


>AF003137-3|AAB93640.1|  625|Caenorhabditis elegans Hypothetical
           protein C27A12.2 protein.
          Length = 625

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -1

Query: 381 HRSILQRLCPP-QFHHYVSVSKYFRYPTIVTEN 286
           +RS   +  PP Q +H V  +K+ +YP+ +TE+
Sbjct: 57  NRSYRMKKRPPAQIYHCVQCNKHIKYPSKITEH 89


>AF304125-1|AAG50238.1|  542|Caenorhabditis elegans 1D304 protein.
          Length = 542

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/41 (34%), Positives = 17/41 (41%)
 Frame = -2

Query: 647 KEFFFYCLCRQTSIRPHLMVSGYRRPWTSAMPRAEPSRCLP 525
           KE+ F C    T        S Y  P ++ MPR  P  C P
Sbjct: 458 KEYSFDCHSPYTMSSEDSRDSAYESPTSALMPRRPPPSCPP 498


>AC024201-8|AAF36020.1|  542|Caenorhabditis elegans Hypothetical
           protein Y71F9B.8 protein.
          Length = 542

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/41 (34%), Positives = 17/41 (41%)
 Frame = -2

Query: 647 KEFFFYCLCRQTSIRPHLMVSGYRRPWTSAMPRAEPSRCLP 525
           KE+ F C    T        S Y  P ++ MPR  P  C P
Sbjct: 458 KEYSFDCHSPYTMSSEDSRDSAYESPTSALMPRRPPPSCPP 498


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,920,811
Number of Sequences: 27780
Number of extensions: 268181
Number of successful extensions: 687
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)