Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0672
         (571 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...   332   2e-92
SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|ch...    32   0.051
SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyc...    28   1.1  
SPCC777.07 |||alpha-1,2-mannosyltransferase |Schizosaccharomyces...    27   1.9  
SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces pom...    26   4.5  
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    26   4.5  
SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit Ss...    25   5.9  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    25   7.8  
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    25   7.8  
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha...    25   7.8  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score =  332 bits (817), Expect = 2e-92
 Identities = 151/183 (82%), Positives = 163/183 (89%)
 Frame = +1

Query: 1    QKETIHPRKSYKMNSSCADILLFSAYKWNVSRPSLLADTKDTMDNTTTQKYWLDIQLRWG 180
            QKETIHPRKSYKMNSSCADILL +AYKWNVSRPSLL D +D +DNTTT KYW+D+QLR+G
Sbjct: 1634 QKETIHPRKSYKMNSSCADILLLAAYKWNVSRPSLLNDNRDVLDNTTTNKYWIDVQLRFG 1693

Query: 181  DYDSHDIERYARAKFLDYTTDNMSIYPSPTGLLIAIDLAYNLHSAYGNWFPGCKPLIQQA 360
            DYDSHDIERY RAKFLDY+TD  S+YPSPTG+LI IDL YN+HSAYGNW PG KPLIQQ+
Sbjct: 1694 DYDSHDIERYTRAKFLDYSTDAQSMYPSPTGVLIGIDLCYNMHSAYGNWIPGMKPLIQQS 1753

Query: 361  MAKIMKANPALYVLRERIRKALQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVT 540
            M KIMKANPALYVLRERIRK LQLY+SEP E YLSS NY ELFSNQI  FVDDTNVYRVT
Sbjct: 1754 MNKIMKANPALYVLRERIRKGLQLYASEPQEQYLSSSNYAELFSNQIQLFVDDTNVYRVT 1813

Query: 541  IHK 549
            IHK
Sbjct: 1814 IHK 1816


>SPBC18H10.21c ||SPBC9B6.01c|dubious|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 157

 Score = 32.3 bits (70), Expect = 0.051
 Identities = 13/38 (34%), Positives = 25/38 (65%)
 Frame = -2

Query: 261 RIYRHVVCSVIQEFSTSISFDVVRIVITPTKLYIKPVL 148
           R++ HV CSV+ +F+  + FD+  +++    L++ PVL
Sbjct: 5   RVFEHVHCSVLYKFNNIVKFDLYNVLL--FLLFLLPVL 40


>SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 364

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 13/50 (26%), Positives = 26/50 (52%)
 Frame = +2

Query: 116 QRTQWTIQLHKSTGLIYSFVGVITILTTSKDMLVLNSWITLQTTCLYILH 265
           +R  W IQL++S  ++  ++  +TIL   KD       +T++ +   + H
Sbjct: 295 KRAHWRIQLYQSNPVLLHWLDEMTILICYKDAAYQKLKLTIEESSKSVEH 344


>SPCC777.07 |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 378

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 11/23 (47%), Positives = 18/23 (78%), Gaps = 1/23 (4%)
 Frame = -3

Query: 161 SSQYFCVVVLSIVSF-VSANKDG 96
           SS YFC+++  I+SF + ++KDG
Sbjct: 6   SSIYFCILLFCIISFYLQSSKDG 28


>SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 605

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
 Frame = +2

Query: 299 ITCTVHTVTGSPVANLLFNKRWPR**KLILP--CMCFGNVYVKHCNCILQNLLNLTSPVR 472
           +  TVH V+ SP       + WP   K           ++Y++H N +LQN++    P  
Sbjct: 340 LNATVHFVSNSPW------QLWPTLSKFFTNDNMPYISSIYLRHFNGVLQNII---EPAA 390

Query: 473 TMENCSLIKSFGSLMTRMCI 532
             +  SL+ +  SL  R  +
Sbjct: 391 ARKRSSLLTAIRSLGDRKIV 410


>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1154

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 17/83 (20%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
 Frame = +1

Query: 19   PRKSYKMNSSCADILLFSAYKWNVSRPSLLADTKDTMDNTTTQKYWLDIQLR---WGDYD 189
            PR++ + N +  +I     ++  +S+  +  ++ D  +NT       + Q       D  
Sbjct: 762  PREALETNLASENIESVKKHRDGLSKIFIRPESADNSNNTNVSFQTDETQTEDETMSDIH 821

Query: 190  SHDIERYARAKFLDYTTDNMSIY 258
              D+E ++++KFL   + N+  Y
Sbjct: 822  PDDVENHSKSKFLGEESKNIIGY 844


>SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit
           Ssl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 421

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -1

Query: 562 FPSKVCELLPDTHSCH 515
           FPSKV E LP   +CH
Sbjct: 286 FPSKVVEQLPSLCACH 301


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +2

Query: 44  HHAPIYYCSQPTSGTCPDHPY 106
           HH  + +   PTS  CP  PY
Sbjct: 653 HHPQVKHNCHPTSEPCPPCPY 673


>SPBC119.07 |ppk19||serine/threonine protein kinase
            Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 449  LNLTSPVRTMENCSLIKSFGS 511
            +N T P+  +EN  ++ SFGS
Sbjct: 1459 INSTIPINPLENHGMLNSFGS 1479


>SPAC4F8.11 |||WD repeat protein, human WDR24
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 846

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 8/32 (25%), Positives = 16/32 (50%)
 Frame = +1

Query: 82  WNVSRPSLLADTKDTMDNTTTQKYWLDIQLRW 177
           W+++RP +   T    D+  +  +W   +L W
Sbjct: 299 WDITRPYIPYRTVSCHDSIVSTMHWASTELLW 330


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,612,224
Number of Sequences: 5004
Number of extensions: 57052
Number of successful extensions: 155
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)