Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0672
(571 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0474 - 3362734-3362827,3363179-3363366,3363458-3363700,336... 349 9e-97
05_01_0460 - 3644229-3644420,3644623-3644865,3644959-3645237,364... 349 9e-97
11_01_0346 - 2589111-2589220,2589613-2589852,2589956-2590028,259... 28 4.6
07_03_1479 - 26832976-26833095,26833737-26833943,26834104-268342... 27 8.0
02_02_0451 + 10387353-10387580,10387675-10387934,10388160-103884... 27 8.0
>06_01_0474 - 3362734-3362827,3363179-3363366,3363458-3363700,
3363820-3364098,3364189-3364386,3364475-3365110,
3365209-3365463,3365579-3365685,3365770-3369566,
3369677-3370166,3370918-3371308,3371481-3371573,
3371687-3371810,3372544-3372791
Length = 2380
Score = 349 bits (858), Expect = 9e-97
Identities = 152/183 (83%), Positives = 171/183 (93%)
Frame = +1
Query: 1 QKETIHPRKSYKMNSSCADILLFSAYKWNVSRPSLLADTKDTMDNTTTQKYWLDIQLRWG 180
QKETIHPRKSYKMNSSCADILLF+A++W +S+PSL++++KD D + KYW+D+QLRWG
Sbjct: 1625 QKETIHPRKSYKMNSSCADILLFAAHRWQMSKPSLVSESKDVFDQKASNKYWIDVQLRWG 1684
Query: 181 DYDSHDIERYARAKFLDYTTDNMSIYPSPTGLLIAIDLAYNLHSAYGNWFPGCKPLIQQA 360
DYDSHDIERY RAKF+DYTTDNMSIYPSPTG++I IDLAYNLHSA+GNWFPG KPL+QQA
Sbjct: 1685 DYDSHDIERYTRAKFMDYTTDNMSIYPSPTGVMIGIDLAYNLHSAFGNWFPGSKPLLQQA 1744
Query: 361 MAKIMKANPALYVLRERIRKALQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVT 540
M KIMK+NPALYVLRERIRK LQLYSSEPTEPYLSSQNYGE+FSNQIIWFVDDTNVYRVT
Sbjct: 1745 MNKIMKSNPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGEIFSNQIIWFVDDTNVYRVT 1804
Query: 541 IHK 549
IHK
Sbjct: 1805 IHK 1807
>05_01_0460 - 3644229-3644420,3644623-3644865,3644959-3645237,
3645328-3645525,3645614-3646249,3646352-3646606,
3646718-3646824,3646909-3650705,3650816-3651305,
3652043-3652433,3652621-3652713,3652818-3652941,
3653871-3654118
Length = 2350
Score = 349 bits (858), Expect = 9e-97
Identities = 152/183 (83%), Positives = 171/183 (93%)
Frame = +1
Query: 1 QKETIHPRKSYKMNSSCADILLFSAYKWNVSRPSLLADTKDTMDNTTTQKYWLDIQLRWG 180
QKETIHPRKSYKMNSSCADILLF+A++W +S+PSL++++KD D + KYW+D+QLRWG
Sbjct: 1625 QKETIHPRKSYKMNSSCADILLFAAHRWQMSKPSLVSESKDVFDQKASNKYWIDVQLRWG 1684
Query: 181 DYDSHDIERYARAKFLDYTTDNMSIYPSPTGLLIAIDLAYNLHSAYGNWFPGCKPLIQQA 360
DYDSHDIERY RAKF+DYTTDNMSIYPSPTG++I IDLAYNLHSA+GNWFPG KPL+QQA
Sbjct: 1685 DYDSHDIERYTRAKFMDYTTDNMSIYPSPTGVMIGIDLAYNLHSAFGNWFPGSKPLLQQA 1744
Query: 361 MAKIMKANPALYVLRERIRKALQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVT 540
M KIMK+NPALYVLRERIRK LQLYSSEPTEPYLSSQNYGE+FSNQIIWFVDDTNVYRVT
Sbjct: 1745 MNKIMKSNPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGEIFSNQIIWFVDDTNVYRVT 1804
Query: 541 IHK 549
IHK
Sbjct: 1805 IHK 1807
>11_01_0346 -
2589111-2589220,2589613-2589852,2589956-2590028,
2590301-2590606,2590698-2590912,2591461-2591755,
2591901-2592065,2592142-2592738,2593029-2593115,
2593203-2593523,2594047-2596071
Length = 1477
Score = 28.3 bits (60), Expect = 4.6
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +2
Query: 128 WTI-QLHKSTGLIYSFVGVITILTTSKDMLVLNSWITL 238
WTI HKS LI F ++ +LT S L+L ++I +
Sbjct: 293 WTIVSCHKSGILISGFFALLKVLTLSSGPLLLKAFINV 330
>07_03_1479 - 26832976-26833095,26833737-26833943,26834104-26834252,
26834330-26834732,26834840-26835118,26835285-26835716,
26836362-26836838,26837171-26837212,26837285-26837545,
26837637-26838938,26839146-26839575,26839643-26840046,
26840360-26840716,26840842-26841102,26841494-26842141,
26842231-26842452,26842547-26842768,26842860-26843009,
26843739-26844111,26844467-26844689,26845167-26845425,
26845585-26845920,26846013-26846999,26848395-26849624,
26849706-26849768,26849858-26849910,26849998-26850079,
26850520-26850588,26851070-26851129,26851205-26851267,
26851993-26852101,26852742-26852827,26853120-26853847,
26854613-26854676
Length = 3716
Score = 27.5 bits (58), Expect = 8.0
Identities = 18/73 (24%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Frame = -2
Query: 567 SSFLQRF-VNCYPIHIRVINEPNDLIREQFSIVLTGEVRFSRF*RIQLQCFTYTFPKHIQ 391
S+FL+ + +NC H R + P + +EQ + ++G+V ++LQ + +
Sbjct: 3435 STFLEVYEINCAR-HNREADSPITIFKEQLNQAISGQVSPEAVVELRLQAYNEITKNIVN 3493
Query: 390 GRISFHYLGHRLL 352
I Y+ H++L
Sbjct: 3494 DNIFSQYM-HKIL 3505
>02_02_0451 +
10387353-10387580,10387675-10387934,10388160-10388484,
10388819-10389061
Length = 351
Score = 27.5 bits (58), Expect = 8.0
Identities = 12/37 (32%), Positives = 24/37 (64%)
Frame = +1
Query: 346 LIQQAMAKIMKANPALYVLRERIRKALQLYSSEPTEP 456
++Q+ A ++ P+ Y+LRE+ R ++L ++E EP
Sbjct: 11 IVQELAAAGVEEPPSRYLLREKDRSDVKLVAAELPEP 47
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,082,280
Number of Sequences: 37544
Number of extensions: 337517
Number of successful extensions: 796
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 795
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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