Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0672
         (571 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40492| Best HMM Match : PROCN (HMM E-Value=0)                      213   6e-56
SB_184| Best HMM Match : PAN (HMM E-Value=4.1e-09)                     31   0.88 
SB_37769| Best HMM Match : Endonuclease_5 (HMM E-Value=2.8)            29   2.0  
SB_6693| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.7  
SB_22661| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  
SB_20965| Best HMM Match : Fz (HMM E-Value=3.1)                        27   8.2  

>SB_40492| Best HMM Match : PROCN (HMM E-Value=0)
          Length = 1784

 Score =  213 bits (521), Expect = 6e-56
 Identities = 93/103 (90%), Positives = 99/103 (96%)
 Frame = +1

Query: 1    QKETIHPRKSYKMNSSCADILLFSAYKWNVSRPSLLADTKDTMDNTTTQKYWLDIQLRWG 180
            QKETIHPRKSYKMNSSCADILLF+AYKWN+ +PSLLADT DTMD T TQKYW+D+QLRWG
Sbjct: 1528 QKETIHPRKSYKMNSSCADILLFAAYKWNIFKPSLLADTNDTMDGTVTQKYWVDVQLRWG 1587

Query: 181  DYDSHDIERYARAKFLDYTTDNMSIYPSPTGLLIAIDLAYNLH 309
            DYDSHDIERYARAKFLDYTTDNMSIYPSPTGLL+AIDLAYNLH
Sbjct: 1588 DYDSHDIERYARAKFLDYTTDNMSIYPSPTGLLVAIDLAYNLH 1630


>SB_184| Best HMM Match : PAN (HMM E-Value=4.1e-09)
          Length = 720

 Score = 30.7 bits (66), Expect = 0.88
 Identities = 25/128 (19%), Positives = 50/128 (39%), Gaps = 2/128 (1%)
 Frame = +1

Query: 82  WNVSRPSLLADTKDTMDNTTTQKYWLDIQLRWGDYDSHDIERYARAKFLDYTTDNMSIYP 261
           W+   P+L       MD+ T   YW+   + W  Y ++         +L  +   ++   
Sbjct: 500 WSRDHPALSCKAIIGMDHVTDGYYWIQPNVTWEAYKTYCDMTTDGGGWLIVSNIEVTNTT 559

Query: 262 SPTGLLI--AIDLAYNLHSAYGNWFPGCKPLIQQAMAKIMKANPALYVLRERIRKALQLY 435
            P  L++   +D   N   +Y   F    P I  A+ + +      +   ++ ++ L +Y
Sbjct: 560 QPPSLIMGTTVDSYINSVMSYPQNF-AISPQILLALLRALHLTQIRFQCSKQSKRKLNVY 618

Query: 436 SSEPTEPY 459
           SS   + Y
Sbjct: 619 SSADAKGY 626


>SB_37769| Best HMM Match : Endonuclease_5 (HMM E-Value=2.8)
          Length = 651

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +1

Query: 121 DTMDNTTTQKYWLDIQLR-WGDYDSHDIERYARAKFLDYTT 240
           D   N TTQ   +DI +R W D  S    RY  + F+ + T
Sbjct: 135 DESHNKTTQSKQMDIHVRYWDDLSSSVTTRYVTSLFMGHAT 175


>SB_6693| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 557

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 13/57 (22%), Positives = 27/57 (47%)
 Frame = +1

Query: 184 YDSHDIERYARAKFLDYTTDNMSIYPSPTGLLIAIDLAYNLHSAYGNWFPGCKPLIQ 354
           Y+   ++ +   +++ Y T   +   +P+ +   I     + +AYG   P C PLI+
Sbjct: 355 YNGDPLQDFTLMRYILYNTLRSTCTLNPSFVAAPITYTITMATAYGLSLPACLPLIK 411


>SB_22661| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 152

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = +1

Query: 373 MKANPALYVLRERIRKALQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYR 534
           MK   A +    + R+ ++  SSEP    +  +   E FS + + FV+   VYR
Sbjct: 85  MKKKSAEFYKSMKKRRTVRKISSEPVPLEVRVRRVRERFSERSLRFVEHMEVYR 138


>SB_20965| Best HMM Match : Fz (HMM E-Value=3.1)
          Length = 529

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 343 VCNRGTSYRMHCASYRPNQWRSANR 269
           +CN G  YR +C+S+R    RS +R
Sbjct: 406 MCNNGFYYRTYCSSFRRCYRRSRSR 430


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,518,659
Number of Sequences: 59808
Number of extensions: 423478
Number of successful extensions: 979
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 978
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1349364063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)