Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0672
         (571 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC064370-1|AAH64370.1| 2335|Homo sapiens PRP8 pre-mRNA processin...   382   e-106
AY486134-1|AAS64747.1|  437|Homo sapiens apoptosis-regulated pro...   382   e-106
AF092565-1|AAC61776.1| 2335|Homo sapiens splicing factor Prp8 pr...   382   e-106
AB007510-1|BAA22563.1| 2335|Homo sapiens PRP8 protein protein.        382   e-106
AY486135-1|AAS64748.1|  436|Homo sapiens apoptosis-regulated pro...   340   2e-93
X63563-1|CAA45124.1| 1174|Homo sapiens RNA polymerase II 140 kDa...    31   3.8  
BC039004-1|AAH39004.1|  612|Homo sapiens carnitine O-octanoyltra...    31   3.8  
BC023503-1|AAH23503.2| 1174|Homo sapiens polymerase (RNA) II (DN...    31   3.8  
AF168793-1|AAF03234.1|  612|Homo sapiens peroxisomal carnitine o...    31   3.8  
AF073770-1|AAD41654.1|  612|Homo sapiens carnitine octanoyltrans...    31   3.8  

>BC064370-1|AAH64370.1| 2335|Homo sapiens PRP8 pre-mRNA processing
            factor 8 homolog (S. cerevisiae) protein.
          Length = 2335

 Score =  382 bits (941), Expect = e-106
 Identities = 174/183 (95%), Positives = 180/183 (98%)
 Frame = +1

Query: 1    QKETIHPRKSYKMNSSCADILLFSAYKWNVSRPSLLADTKDTMDNTTTQKYWLDIQLRWG 180
            QKETIHPRKSYKMNSSCADILLF++YKWNVSRPSLLAD+KD MD+TTTQKYW+DIQLRWG
Sbjct: 1610 QKETIHPRKSYKMNSSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKYWIDIQLRWG 1669

Query: 181  DYDSHDIERYARAKFLDYTTDNMSIYPSPTGLLIAIDLAYNLHSAYGNWFPGCKPLIQQA 360
            DYDSHDIERYARAKFLDYTTDNMSIYPSPTG+LIAIDLAYNLHSAYGNWFPG KPLIQQA
Sbjct: 1670 DYDSHDIERYARAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSAYGNWFPGSKPLIQQA 1729

Query: 361  MAKIMKANPALYVLRERIRKALQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVT 540
            MAKIMKANPALYVLRERIRK LQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVT
Sbjct: 1730 MAKIMKANPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVT 1789

Query: 541  IHK 549
            IHK
Sbjct: 1790 IHK 1792


>AY486134-1|AAS64747.1|  437|Homo sapiens apoptosis-regulated
           protein 2 protein.
          Length = 437

 Score =  382 bits (941), Expect = e-106
 Identities = 174/183 (95%), Positives = 180/183 (98%)
 Frame = +1

Query: 1   QKETIHPRKSYKMNSSCADILLFSAYKWNVSRPSLLADTKDTMDNTTTQKYWLDIQLRWG 180
           QKETIHPRKSYKMNSSCADILLF++YKWNVSRPSLLAD+KD MD+TTTQKYW+DIQLRWG
Sbjct: 109 QKETIHPRKSYKMNSSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKYWIDIQLRWG 168

Query: 181 DYDSHDIERYARAKFLDYTTDNMSIYPSPTGLLIAIDLAYNLHSAYGNWFPGCKPLIQQA 360
           DYDSHDIERYARAKFLDYTTDNMSIYPSPTG+LIAIDLAYNLHSAYGNWFPG KPLIQQA
Sbjct: 169 DYDSHDIERYARAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSAYGNWFPGSKPLIQQA 228

Query: 361 MAKIMKANPALYVLRERIRKALQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVT 540
           MAKIMKANPALYVLRERIRK LQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVT
Sbjct: 229 MAKIMKANPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVT 288

Query: 541 IHK 549
           IHK
Sbjct: 289 IHK 291


>AF092565-1|AAC61776.1| 2335|Homo sapiens splicing factor Prp8
            protein.
          Length = 2335

 Score =  382 bits (941), Expect = e-106
 Identities = 174/183 (95%), Positives = 180/183 (98%)
 Frame = +1

Query: 1    QKETIHPRKSYKMNSSCADILLFSAYKWNVSRPSLLADTKDTMDNTTTQKYWLDIQLRWG 180
            QKETIHPRKSYKMNSSCADILLF++YKWNVSRPSLLAD+KD MD+TTTQKYW+DIQLRWG
Sbjct: 1610 QKETIHPRKSYKMNSSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKYWIDIQLRWG 1669

Query: 181  DYDSHDIERYARAKFLDYTTDNMSIYPSPTGLLIAIDLAYNLHSAYGNWFPGCKPLIQQA 360
            DYDSHDIERYARAKFLDYTTDNMSIYPSPTG+LIAIDLAYNLHSAYGNWFPG KPLIQQA
Sbjct: 1670 DYDSHDIERYARAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSAYGNWFPGSKPLIQQA 1729

Query: 361  MAKIMKANPALYVLRERIRKALQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVT 540
            MAKIMKANPALYVLRERIRK LQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVT
Sbjct: 1730 MAKIMKANPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVT 1789

Query: 541  IHK 549
            IHK
Sbjct: 1790 IHK 1792


>AB007510-1|BAA22563.1| 2335|Homo sapiens PRP8 protein protein.
          Length = 2335

 Score =  382 bits (941), Expect = e-106
 Identities = 174/183 (95%), Positives = 180/183 (98%)
 Frame = +1

Query: 1    QKETIHPRKSYKMNSSCADILLFSAYKWNVSRPSLLADTKDTMDNTTTQKYWLDIQLRWG 180
            QKETIHPRKSYKMNSSCADILLF++YKWNVSRPSLLAD+KD MD+TTTQKYW+DIQLRWG
Sbjct: 1610 QKETIHPRKSYKMNSSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKYWIDIQLRWG 1669

Query: 181  DYDSHDIERYARAKFLDYTTDNMSIYPSPTGLLIAIDLAYNLHSAYGNWFPGCKPLIQQA 360
            DYDSHDIERYARAKFLDYTTDNMSIYPSPTG+LIAIDLAYNLHSAYGNWFPG KPLIQQA
Sbjct: 1670 DYDSHDIERYARAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSAYGNWFPGSKPLIQQA 1729

Query: 361  MAKIMKANPALYVLRERIRKALQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVT 540
            MAKIMKANPALYVLRERIRK LQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVT
Sbjct: 1730 MAKIMKANPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVT 1789

Query: 541  IHK 549
            IHK
Sbjct: 1790 IHK 1792


>AY486135-1|AAS64748.1|  436|Homo sapiens apoptosis-regulated
           protein 1 protein.
          Length = 436

 Score =  340 bits (836), Expect = 2e-93
 Identities = 160/183 (87%), Positives = 167/183 (91%)
 Frame = +1

Query: 1   QKETIHPRKSYKMNSSCADILLFSAYKWNVSRPSLLADTKDTMDNTTTQKYWLDIQLRWG 180
           QKETIHPRKSYKMNSSCADILLF++YKWNVSRPSLLAD+KD MD+TTTQKYW+DIQLRWG
Sbjct: 109 QKETIHPRKSYKMNSSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKYWIDIQLRWG 168

Query: 181 DYDSHDIERYARAKFLDYTTDNMSIYPSPTGLLIAIDLAYNLHSAYGNWFPGCKPLIQQA 360
           DYDSHDIERYARAKFLDYTTDNMSIYPSPTG+LIAIDLAYNLHSAY       +      
Sbjct: 169 DYDSHDIERYARAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSAYETGSQQ-QAFHTTG 227

Query: 361 MAKIMKANPALYVLRERIRKALQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVT 540
            AKIMKANPALYVLRERIRK LQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVT
Sbjct: 228 QAKIMKANPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVT 287

Query: 541 IHK 549
           IHK
Sbjct: 288 IHK 290


>X63563-1|CAA45124.1| 1174|Homo sapiens RNA polymerase II 140 kDa
           subunit protein.
          Length = 1174

 Score = 30.7 bits (66), Expect = 3.8
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = -2

Query: 255 YRHVVCSVIQEFSTSISFDVVRIVITPTKLYIKPVLLCSCIVHC 124
           ++ +V S + E+  ++  + V + +TP  L  K V  CS   HC
Sbjct: 653 WQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKEVAYCSTYTHC 696


>BC039004-1|AAH39004.1|  612|Homo sapiens carnitine
           O-octanoyltransferase protein.
          Length = 612

 Score = 30.7 bits (66), Expect = 3.8
 Identities = 13/50 (26%), Positives = 30/50 (60%)
 Frame = +1

Query: 355 QAMAKIMKANPALYVLRERIRKALQLYSSEPTEPYLSSQNYGELFSNQII 504
           +A   ++  +P    L E+I+ +L +YS E + P+++ ++Y E+ +  +I
Sbjct: 250 KAREYLIGLDPENLALLEKIQSSLLVYSMEDSSPHVTPEDYSEIIAAILI 299


>BC023503-1|AAH23503.2| 1174|Homo sapiens polymerase (RNA) II (DNA
           directed) polypeptide B, 140kDa protein.
          Length = 1174

 Score = 30.7 bits (66), Expect = 3.8
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = -2

Query: 255 YRHVVCSVIQEFSTSISFDVVRIVITPTKLYIKPVLLCSCIVHC 124
           ++ +V S + E+  ++  + V + +TP  L  K V  CS   HC
Sbjct: 653 WQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKEVAYCSTYTHC 696


>AF168793-1|AAF03234.1|  612|Homo sapiens peroxisomal carnitine
           octanoyltransferase protein.
          Length = 612

 Score = 30.7 bits (66), Expect = 3.8
 Identities = 13/50 (26%), Positives = 30/50 (60%)
 Frame = +1

Query: 355 QAMAKIMKANPALYVLRERIRKALQLYSSEPTEPYLSSQNYGELFSNQII 504
           +A   ++  +P    L E+I+ +L +YS E + P+++ ++Y E+ +  +I
Sbjct: 250 KAREYLIGLDPENLALLEKIQSSLLVYSMEDSSPHVTPEDYSEIIAAILI 299


>AF073770-1|AAD41654.1|  612|Homo sapiens carnitine
           octanoyltransferase protein.
          Length = 612

 Score = 30.7 bits (66), Expect = 3.8
 Identities = 13/50 (26%), Positives = 30/50 (60%)
 Frame = +1

Query: 355 QAMAKIMKANPALYVLRERIRKALQLYSSEPTEPYLSSQNYGELFSNQII 504
           +A   ++  +P    L E+I+ +L +YS E + P+++ ++Y E+ +  +I
Sbjct: 250 KAREYLIGLDPENLALLEKIQSSLLVYSMEDSSPHVTPEDYSEIIAAILI 299


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,609,993
Number of Sequences: 237096
Number of extensions: 1944288
Number of successful extensions: 3540
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3539
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5816287018
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)