Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0672
         (571 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L14433-3|AAA27977.1| 2329|Caenorhabditis elegans Yeast prp (spli...   374   e-104
Z75530-2|CAA99795.2|  351|Caenorhabditis elegans Hypothetical pr...    30   1.0  
Z81143-2|CAB03515.1|  340|Caenorhabditis elegans Hypothetical pr...    29   2.4  
AC006610-4|AAK85450.1|  246|Caenorhabditis elegans Hypothetical ...    28   4.1  
Z81037-7|CAB02744.2|  431|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z48334-6|CAA88313.1|  655|Caenorhabditis elegans Hypothetical pr...    27   7.2  
U21321-3|AAG00052.2|  655|Caenorhabditis elegans Hypothetical pr...    27   7.2  
AF314467-1|AAG41979.1|  655|Caenorhabditis elegans APC6 protein.       27   7.2  
AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical ...    27   9.5  

>L14433-3|AAA27977.1| 2329|Caenorhabditis elegans Yeast prp (splicing
            factor) relatedprotein 8 protein.
          Length = 2329

 Score =  374 bits (920), Expect = e-104
 Identities = 167/183 (91%), Positives = 178/183 (97%)
 Frame = +1

Query: 1    QKETIHPRKSYKMNSSCADILLFSAYKWNVSRPSLLADTKDTMDNTTTQKYWLDIQLRWG 180
            QKETIHPRKSYKMNSSCAD+LLF+ YKWNVSRPSL+AD+KD MDNTTTQKYWLD+QLRWG
Sbjct: 1603 QKETIHPRKSYKMNSSCADVLLFAQYKWNVSRPSLMADSKDVMDNTTTQKYWLDVQLRWG 1662

Query: 181  DYDSHDIERYARAKFLDYTTDNMSIYPSPTGLLIAIDLAYNLHSAYGNWFPGCKPLIQQA 360
            DYDSHD+ERYARAKFLDYTTDNMSIYPSPTG+LIAIDLAYNL+SAYGNWFPG KPLI+QA
Sbjct: 1663 DYDSHDVERYARAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLYSAYGNWFPGMKPLIRQA 1722

Query: 361  MAKIMKANPALYVLRERIRKALQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVT 540
            MAKI+KANPA YVLRERIRK LQLYSSEPTEPYL+SQNYGELFSNQIIWFVDDTNVYRVT
Sbjct: 1723 MAKIIKANPAFYVLRERIRKGLQLYSSEPTEPYLTSQNYGELFSNQIIWFVDDTNVYRVT 1782

Query: 541  IHK 549
            IHK
Sbjct: 1783 IHK 1785


>Z75530-2|CAA99795.2|  351|Caenorhabditis elegans Hypothetical
           protein C47E8.4 protein.
          Length = 351

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +1

Query: 352 QQAMAKIMKANPALYVLRERIRKALQLYSSEPTEPYLSSQNYGELFSN 495
           Q A     +++PA  VLR    K   +Y +   EP++ S+ YG  F +
Sbjct: 300 QDAALDYGESHPAKIVLRSWYEKNKHIYPASRWEPFVPSKKYGRNFDD 347


>Z81143-2|CAB03515.1|  340|Caenorhabditis elegans Hypothetical
           protein ZK265.3 protein.
          Length = 340

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +1

Query: 202 ERYARAKFLDYTTDNMSIYPSPTGLLIAIDLAYNLHSAYGNWFP 333
           E+Y      ++ T   ++ P PTGL +  DL Y+L   YG+ FP
Sbjct: 148 EKYEGGATANFMTIFRNLRPPPTGLKVYDDLWYDLR--YGDNFP 189


>AC006610-4|AAK85450.1|  246|Caenorhabditis elegans Hypothetical
           protein C30F12.4 protein.
          Length = 246

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 397 VLRERIRKALQLYSSEPTEPYLSSQNY 477
           V+R+ IR  +  YS +   PY SSQ Y
Sbjct: 39  VMRQHIRPEISQYSQQQPPPYYSSQVY 65


>Z81037-7|CAB02744.2|  431|Caenorhabditis elegans Hypothetical
           protein C17E4.3 protein.
          Length = 431

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +2

Query: 380 LILPCMCFGNVYVKHCNCILQNLLNLTSPVRTMENCSLIK 499
           LI PC C G + + H +C L++ L LTS      NC + K
Sbjct: 34  LISPCKCSGTMGLFHRSC-LEHWLTLTSTT----NCEICK 68


>Z48334-6|CAA88313.1|  655|Caenorhabditis elegans Hypothetical
           protein F10B5.6 protein.
          Length = 655

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +1

Query: 370 IMKANPALYVLRERIRKALQLYSSEP 447
           +  + P + +LR+R+R+  QLY+ EP
Sbjct: 622 VSSSQPFMSMLRDRLRRQDQLYAQEP 647


>U21321-3|AAG00052.2|  655|Caenorhabditis elegans Hypothetical
           protein ZK177.4 protein.
          Length = 655

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
 Frame = +2

Query: 386 LPCMCFGNVYVKHCNCILQNLLNLTSPVRTM-ENCSLIKSF--GSLMTRMCIG*QFTNL* 556
           LP  CF   Y  H + +LQN+      VR + E C   K+F    L +  CI  +F NL 
Sbjct: 102 LPSECFCECYPLHDSLLLQNISLSVVKVRLLPEKCD-EKTFVTAVLFSDNCI--RFYNLQ 158

Query: 557 RKLDT 571
           +K D+
Sbjct: 159 KKFDS 163


>AF314467-1|AAG41979.1|  655|Caenorhabditis elegans APC6 protein.
          Length = 655

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +1

Query: 370 IMKANPALYVLRERIRKALQLYSSEP 447
           +  + P + +LR+R+R+  QLY+ EP
Sbjct: 622 VSSSQPFMSMLRDRLRRQDQLYAQEP 647


>AC006733-9|AAF60491.2| 3901|Caenorhabditis elegans Hypothetical
           protein Y32H12A.8 protein.
          Length = 3901

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +1

Query: 19  PRKSYKMNSSCADILLFSAYKWNVSRPSLLADTKDTMDNTTTQKYW 156
           P + Y + ++CA +   S + W+V RP L   T D   ++ T   W
Sbjct: 290 PDRPYHL-ATCASVNETSVHVWDVRRPYLPYVTYDEHRDSVTDACW 334


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,297,832
Number of Sequences: 27780
Number of extensions: 312617
Number of successful extensions: 823
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 823
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)