Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0672
(571 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g80070.1 68414.m09373 splicing factor, putative strong simila... 347 4e-96
At4g38780.1 68417.m05491 splicing factor, putative strong simila... 346 5e-96
At4g02740.1 68417.m00374 F-box family protein contains Pfam PF00... 29 2.9
At4g29140.1 68417.m04170 MATE efflux protein-related several hyp... 28 5.0
At1g77630.1 68414.m09038 peptidoglycan-binding LysM domain-conta... 28 5.0
At1g21880.2 68414.m02739 peptidoglycan-binding LysM domain-conta... 28 5.0
At1g21880.1 68414.m02738 peptidoglycan-binding LysM domain-conta... 28 5.0
At4g31440.1 68417.m04468 hypothetical protein 27 8.8
At2g42600.2 68415.m05272 phosphoenolpyruvate carboxylase, putati... 27 8.8
At2g42600.1 68415.m05271 phosphoenolpyruvate carboxylase, putati... 27 8.8
>At1g80070.1 68414.m09373 splicing factor, putative strong similarity
to splicing factor Prp8 [Homo sapiens] GI:3661610;
contains Pfam profile PF01398: Mov34/MPN/PAD-1 family
Length = 2382
Score = 347 bits (852), Expect = 4e-96
Identities = 151/183 (82%), Positives = 170/183 (92%)
Frame = +1
Query: 1 QKETIHPRKSYKMNSSCADILLFSAYKWNVSRPSLLADTKDTMDNTTTQKYWLDIQLRWG 180
QKETIHPRKSYKMNSSCAD+LLF+A+KW +S+PSL+A++KD D + KYW+D+QLRWG
Sbjct: 1657 QKETIHPRKSYKMNSSCADVLLFAAHKWPMSKPSLVAESKDMFDQKASNKYWIDVQLRWG 1716
Query: 181 DYDSHDIERYARAKFLDYTTDNMSIYPSPTGLLIAIDLAYNLHSAYGNWFPGCKPLIQQA 360
DYDSHDIERY RAKF+DYTTDNMSIYPSPTG++I +DLAYNLHSA+GNWFPG KPL+ QA
Sbjct: 1717 DYDSHDIERYTRAKFMDYTTDNMSIYPSPTGVMIGLDLAYNLHSAFGNWFPGSKPLLAQA 1776
Query: 361 MAKIMKANPALYVLRERIRKALQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVT 540
M KIMK+NPALYVLRERIRK LQLYSSEPTEPYLSSQNYGE+FSNQIIWFVDDTNVYRVT
Sbjct: 1777 MNKIMKSNPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGEIFSNQIIWFVDDTNVYRVT 1836
Query: 541 IHK 549
IHK
Sbjct: 1837 IHK 1839
>At4g38780.1 68417.m05491 splicing factor, putative strong similarity
to splicing factor Prp8 [Homo sapiens] GI:3661610;
contains Pfam profile PF01398: Mov34/MPN/PAD-1 family
Length = 2332
Score = 346 bits (851), Expect = 5e-96
Identities = 150/183 (81%), Positives = 170/183 (92%)
Frame = +1
Query: 1 QKETIHPRKSYKMNSSCADILLFSAYKWNVSRPSLLADTKDTMDNTTTQKYWLDIQLRWG 180
QKETIHPRKSYKMNSSCAD+LLF+A+KW +S+PSL+A++KD D + KYW+D+QLRWG
Sbjct: 1609 QKETIHPRKSYKMNSSCADVLLFAAHKWPMSKPSLIAESKDVFDQKASNKYWIDVQLRWG 1668
Query: 181 DYDSHDIERYARAKFLDYTTDNMSIYPSPTGLLIAIDLAYNLHSAYGNWFPGCKPLIQQA 360
DYDSHDIERY +AKF+DYTTDNMSIYPSPTG++I +DLAYNLHSA+GNWFPG KPL+ QA
Sbjct: 1669 DYDSHDIERYTKAKFMDYTTDNMSIYPSPTGVIIGLDLAYNLHSAFGNWFPGSKPLLAQA 1728
Query: 361 MAKIMKANPALYVLRERIRKALQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVT 540
M KIMK+NPALYVLRERIRK LQLYSSEPTEPYLSSQNYGE+FSNQIIWFVDDTNVYRVT
Sbjct: 1729 MNKIMKSNPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGEIFSNQIIWFVDDTNVYRVT 1788
Query: 541 IHK 549
IHK
Sbjct: 1789 IHK 1791
>At4g02740.1 68417.m00374 F-box family protein contains Pfam
PF00646: F-box domain; similar to F-box protein FBL2
(GI:6063090) [Homo sapiens]
Length = 645
Score = 28.7 bits (61), Expect = 2.9
Identities = 21/91 (23%), Positives = 41/91 (45%)
Frame = -2
Query: 477 IVLTGEVRFSRF*RIQLQCFTYTFPKHIQGRISFHYLGHRLLNKRFATGEPVTVCTVQVI 298
++L RFSR +++ P + ++ F L + L + A C++ +
Sbjct: 407 LLLESTKRFSRMRATHYNYNSWSLPDELTIKV-FSGLDTKSLMQASACCTMFRKCSIDPL 465
Query: 297 GQINGDQQTGR*RIYRHVVCSVIQEFSTSIS 205
+ D + G RI+ +VCS+I + T +S
Sbjct: 466 CYSHIDLKMGGKRIFDEIVCSMIHKAGTELS 496
>At4g29140.1 68417.m04170 MATE efflux protein-related several
hypothetical proteins - Arabidopsis thaliana; contains
Pfam profile PF01554: Uncharacterized membrane protein
family
Length = 532
Score = 27.9 bits (59), Expect = 5.0
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = +1
Query: 214 RAKFLDYTTDNMSIYPSPTGLLIAIDLAYNLHSAYGNWFPGCKPLIQQAMAKI 372
R K T ++ + TG+ IA AY++ +A+G F G K ++Q A +
Sbjct: 352 RPKTAKLTATVAIVFAAVTGI-IAAAFAYSVRNAWGRIFTGDKEILQLTAAAL 403
>At1g77630.1 68414.m09038 peptidoglycan-binding LysM
domain-containing protein contains Pfam profile PF01476:
LysM domain
Length = 423
Score = 27.9 bits (59), Expect = 5.0
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -2
Query: 237 SVIQEFSTSISFDVVRIVITPTKLYIKPVLLCSCI 133
S++ S IS+ V + P KL++K + CSC+
Sbjct: 64 SMLLSNSIDISYPDVENHVLPAKLFLKIPITCSCV 98
>At1g21880.2 68414.m02739 peptidoglycan-binding LysM
domain-containing protein contains Pfam profile PF01476:
LysM domain
Length = 416
Score = 27.9 bits (59), Expect = 5.0
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = -2
Query: 237 SVIQEFSTSISFDVVRIVITPTKLYIKPVLLCSCI 133
S++ + IS+ V I P+KL++K + CSC+
Sbjct: 67 SILLANAIDISYPDVENHILPSKLFLKIPITCSCV 101
>At1g21880.1 68414.m02738 peptidoglycan-binding LysM
domain-containing protein contains Pfam profile PF01476:
LysM domain
Length = 316
Score = 27.9 bits (59), Expect = 5.0
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = -2
Query: 237 SVIQEFSTSISFDVVRIVITPTKLYIKPVLLCSCI 133
S++ + IS+ V I P+KL++K + CSC+
Sbjct: 67 SILLANAIDISYPDVENHILPSKLFLKIPITCSCV 101
>At4g31440.1 68417.m04468 hypothetical protein
Length = 379
Score = 27.1 bits (57), Expect = 8.8
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -2
Query: 528 HIRVINEPNDLIREQFSIVL 469
HI+ N+P+D+ REQ S+ L
Sbjct: 324 HIQTSNQPSDITREQHSVSL 343
>At2g42600.2 68415.m05272 phosphoenolpyruvate carboxylase, putative
/ PEP carboxylase, putative (PPC2) strong similarity to
phosphoenolpyruvate carboxylase [Brassica napus]
GI:507808; contains Pfam profile PF00311:
phosphoenolpyruvate carboxylase
Length = 793
Score = 27.1 bits (57), Expect = 8.8
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = -2
Query: 534 PIHIRVINEPNDLIREQFSIVLTGEV 457
P H+ ++++P D I Q + + GEV
Sbjct: 644 PTHLAILSQPPDTIHGQLRVTVQGEV 669
>At2g42600.1 68415.m05271 phosphoenolpyruvate carboxylase, putative
/ PEP carboxylase, putative (PPC2) strong similarity to
phosphoenolpyruvate carboxylase [Brassica napus]
GI:507808; contains Pfam profile PF00311:
phosphoenolpyruvate carboxylase
Length = 793
Score = 27.1 bits (57), Expect = 8.8
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = -2
Query: 534 PIHIRVINEPNDLIREQFSIVLTGEV 457
P H+ ++++P D I Q + + GEV
Sbjct: 644 PTHLAILSQPPDTIHGQLRVTVQGEV 669
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,322,421
Number of Sequences: 28952
Number of extensions: 283446
Number of successful extensions: 620
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1102220672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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