Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0671
         (325 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)               75   1e-14
SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)                  65   1e-11
SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)                   64   3e-11
SB_22388| Best HMM Match : Extensin_2 (HMM E-Value=0.086)              52   8e-08
SB_4934| Best HMM Match : NAD_binding_2 (HMM E-Value=4.8)              49   1e-06
SB_56262| Best HMM Match : Cpn60_TCP1 (HMM E-Value=6.6e-15)            46   5e-06
SB_25097| Best HMM Match : No HMM Matches (HMM E-Value=.)              43   5e-05
SB_49248| Best HMM Match : Cpn60_TCP1 (HMM E-Value=1.6)                42   1e-04
SB_25096| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.030
SB_35153| Best HMM Match : Zip (HMM E-Value=9.1e-05)                   31   0.28 
SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.87 
SB_28169| Best HMM Match : Paramyxo_C (HMM E-Value=8.7)                27   4.6  
SB_39160| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   6.1  
SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     26   6.1  
SB_8600| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   8.1  
SB_8974| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   8.1  

>SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 762

 Score = 74.9 bits (176), Expect = 1e-14
 Identities = 35/52 (67%), Positives = 44/52 (84%)
 Frame = +3

Query: 36  MAAISLLNPKAEFARAAQALAVNISAAKGIQDVMKTNLGPKGTMRMLVSGAG 191
           MAAI  LNPKAE AR+A AL++NI+AA+G+QDV+KTNLGPKGTM++L    G
Sbjct: 1   MAAIKSLNPKAEVARSAAALSLNITAARGLQDVLKTNLGPKGTMKILAVFTG 52



 Score = 43.6 bits (98), Expect = 4e-05
 Identities = 19/26 (73%), Positives = 22/26 (84%)
 Frame = +3

Query: 237 QIQHPTASLIARASTTQNDAPGNGTT 314
           QIQHPTASLIAR +T Q+D  G+GTT
Sbjct: 170 QIQHPTASLIARVATAQDDITGDGTT 195


>SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
          Length = 505

 Score = 65.3 bits (152), Expect = 1e-11
 Identities = 28/71 (39%), Positives = 47/71 (66%)
 Frame = +3

Query: 102 NISAAKGIQDVMKTNLGPKGTMRMLVSGAGDIKITKDGNVLLHEMQIQHPTASLIARAST 281
           +I AA+ +  ++KT+LGPKG  +M+VS  G++ +T DG  +L  M++ H  A L+   S 
Sbjct: 35  HILAARAVASILKTSLGPKGMDKMMVSPDGEVTVTNDGATILGMMEVDHQIAKLMVELSK 94

Query: 282 TQNDAPGNGTT 314
           +Q++  G+GTT
Sbjct: 95  SQDNEIGDGTT 105


>SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
          Length = 531

 Score = 63.7 bits (148), Expect = 3e-11
 Identities = 35/92 (38%), Positives = 53/92 (57%), Gaps = 2/92 (2%)
 Frame = +3

Query: 45  ISLLNPKAEFARAAQALAVNISAAKGIQDVMKTNLGPKGTMRMLVSGA--GDIKITKDGN 218
           +S+LN  AE  RA  A   +   A  I D++K+ LGPKG  ++L S    G+I++T DG 
Sbjct: 6   VSILNQGAEEERAETARLSSFVGAIAIGDLVKSTLGPKGMDKILQSFGQNGNIQVTNDGA 65

Query: 219 VLLHEMQIQHPTASLIARASTTQNDAPGNGTT 314
            +L  + I +P A ++   S  Q+D  G+GTT
Sbjct: 66  TILKSIGIDNPAAKILVELSKVQDDEVGDGTT 97


>SB_22388| Best HMM Match : Extensin_2 (HMM E-Value=0.086)
          Length = 724

 Score = 52.4 bits (120), Expect = 8e-08
 Identities = 25/82 (30%), Positives = 44/82 (53%)
 Frame = +3

Query: 45  ISLLNPKAEFARAAQALAVNISAAKGIQDVMKTNLGPKGTMRMLVSGAGDIKITKDGNVL 224
           I LL    + ++    L  NI A + I D ++T LGP+G  +++V G G   I+ DG  +
Sbjct: 641 IILLKEGTDASQGIPQLISNIDACQFIADAVRTTLGPRGMDKLIVDGRGKATISNDGATI 700

Query: 225 LHEMQIQHPTASLIARASTTQN 290
           ++ + I HP A  +   + +Q+
Sbjct: 701 INLLDIVHPAAKTLVDIAKSQD 722


>SB_4934| Best HMM Match : NAD_binding_2 (HMM E-Value=4.8)
          Length = 186

 Score = 48.8 bits (111), Expect = 1e-06
 Identities = 20/38 (52%), Positives = 28/38 (73%)
 Frame = +3

Query: 102 NISAAKGIQDVMKTNLGPKGTMRMLVSGAGDIKITKDG 215
           NI+AAK + D ++T+LGPKG  +M+  G GD+ IT DG
Sbjct: 29  NITAAKAVADAIRTSLGPKGMDKMIQGGNGDVTITNDG 66


>SB_56262| Best HMM Match : Cpn60_TCP1 (HMM E-Value=6.6e-15)
          Length = 563

 Score = 46.4 bits (105), Expect = 5e-06
 Identities = 20/74 (27%), Positives = 41/74 (55%)
 Frame = +3

Query: 96  AVNISAAKGIQDVMKTNLGPKGTMRMLVSGAGDIKITKDGNVLLHEMQIQHPTASLIARA 275
           A  +   +  + ++K + GP G   ML S +G+I IT  G+++L  + + +PT  +I  A
Sbjct: 3   AAALQTCQNFERILKKSFGPNGLDVMLRSSSGNILITNSGSMILESLTMGNPTERMIVEA 62

Query: 276 STTQNDAPGNGTTF 317
           + + +   G+G ++
Sbjct: 63  ARSLSGRTGSGASY 76


>SB_25097| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 118

 Score = 43.2 bits (97), Expect = 5e-05
 Identities = 17/38 (44%), Positives = 26/38 (68%)
 Frame = +3

Query: 201 ITKDGNVLLHEMQIQHPTASLIARASTTQNDAPGNGTT 314
           +T DGN +L E+Q++HP A  +   S TQ++  G+GTT
Sbjct: 1   MTNDGNAILREIQVKHPAAKSMIEISRTQDEEVGDGTT 38


>SB_49248| Best HMM Match : Cpn60_TCP1 (HMM E-Value=1.6)
          Length = 278

 Score = 41.9 bits (94), Expect = 1e-04
 Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 4/90 (4%)
 Frame = +3

Query: 57  NPKAEFARAAQALAVNISAAKGIQDVMKTNLGPKGTMRMLVSGAGDIKITKDGNVLLHEM 236
           N   E    A+A A  +     + D +   LGPKG   ++    G  KITKDG  +   +
Sbjct: 57  NSPKELKFGAEARAAMLQGVDTLADAVAVTLGPKGKNVIIEQSFGGPKITKDGVTVAKAI 116

Query: 237 QI----QHPTASLIARASTTQNDAPGNGTT 314
           ++    Q+  A L+   +   N+  G+GTT
Sbjct: 117 ELKDKYQNIGARLVQDVANNTNEEAGDGTT 146


>SB_25096| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 315

 Score = 33.9 bits (74), Expect = 0.030
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = +3

Query: 213 GNVLLHEMQIQHPTASLIARASTTQNDAPGNGTT 314
           GNV   ++Q++HP A  +   S TQ++  G+GTT
Sbjct: 202 GNVQAAKIQVKHPAAKSMIEISRTQDEEVGDGTT 235


>SB_35153| Best HMM Match : Zip (HMM E-Value=9.1e-05)
          Length = 651

 Score = 30.7 bits (66), Expect = 0.28
 Identities = 17/59 (28%), Positives = 29/59 (49%)
 Frame = +3

Query: 51  LLNPKAEFARAAQALAVNISAAKGIQDVMKTNLGPKGTMRMLVSGAGDIKITKDGNVLL 227
           +LN  A+F  + + +    S  +G   V +  LG   T  +  +GAG + + K G V+L
Sbjct: 64  VLNSHAQFCPSLKEMRGESSMIRGYSPVTQAFLGTLFTWAVTAAGAGLVFVFKSGQVML 122


>SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 204

 Score = 29.1 bits (62), Expect = 0.87
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -3

Query: 248 VLDLHLM*QNIAILGDLYVPSTRNQHPHRAF 156
           V DL  + +    LGD+Y+P  RN H  R F
Sbjct: 29  VEDLKQVFKKYGDLGDIYIPRDRNTHESRGF 59


>SB_28169| Best HMM Match : Paramyxo_C (HMM E-Value=8.7)
          Length = 443

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = -3

Query: 209 LGDLYVPSTRNQHPHRAFGTKVSFHY--ILNSFSCGYIYSKCLCSTSEL 69
           L D++V +T   +PH   G  ++F+Y  I   FS  Y  S    ST  L
Sbjct: 142 LNDVWVENTCRTYPHAVAGHTIAFNYDPISLEFSLQYETSPKCKSTETL 190


>SB_39160| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 379

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 8/24 (33%), Positives = 13/24 (54%), Gaps = 2/24 (8%)
 Frame = +2

Query: 155 QRHDEDVGFWCWGHKDHQ--GWQC 220
           ++H++D+  W W H D     W C
Sbjct: 112 EQHEDDITEWYWNHPDENLTQWLC 135


>SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 4303

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -1

Query: 265 ISEAVGCWICISCNKTLPS 209
           +SE++G ++CI CN+   S
Sbjct: 697 VSESLGLYVCIKCNEACES 715


>SB_8600| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 450

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 16/45 (35%), Positives = 20/45 (44%)
 Frame = +3

Query: 180 SGAGDIKITKDGNVLLHEMQIQHPTASLIARASTTQNDAPGNGTT 314
           SG G   ITKDGNV +      +P AS  +  S+        G T
Sbjct: 42  SGGGVFDITKDGNVDMSITLKINPEASSTSGGSSQPGGGGNEGQT 86


>SB_8974| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 323

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 25/88 (28%), Positives = 35/88 (39%), Gaps = 1/88 (1%)
 Frame = +3

Query: 42  AISLLNPKAEFARAAQALAVNISAAKGIQDVMKTNLGPKGTMRMLVSGAGD-IKITKDGN 218
           A  ++ P+ E  +   A+  NI AAK   DV+K      G   +  S  GD  K+   G 
Sbjct: 241 ATKVMYPERE-KKDRTAIYANIRAAKNCLDVLKAGGKSNGLYTVKPSADGDAFKVRNQGT 299

Query: 219 VLLHEMQIQHPTASLIARASTTQNDAPG 302
               E  I   T  +  +   TQ D  G
Sbjct: 300 ----EQCIHRETTRVRVQIVYTQVDQSG 323


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,046,282
Number of Sequences: 59808
Number of extensions: 198674
Number of successful extensions: 468
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 467
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 438034835
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)