Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0671
         (325 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   1.6  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    20   6.5  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    20   6.5  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                20   8.6  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    20   8.6  

>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 22.2 bits (45), Expect = 1.6
 Identities = 9/29 (31%), Positives = 12/29 (41%)
 Frame = -2

Query: 240 FASHVTKHCHPW*SLCPQHQKPTSSSCLW 154
           F  + + H HPW     Q  KP     +W
Sbjct: 120 FVPNHSSHEHPWFKKSVQRIKPYDEYYVW 148


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 20.2 bits (40), Expect = 6.5
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +3

Query: 276 STTQNDAPGNG 308
           STT N +PG+G
Sbjct: 281 STTMNGSPGSG 291


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 20.2 bits (40), Expect = 6.5
 Identities = 8/26 (30%), Positives = 12/26 (46%)
 Frame = +3

Query: 240 IQHPTASLIARASTTQNDAPGNGTTF 317
           I+H    L+  ++    D P NG  F
Sbjct: 511 IEHEALLLVITSTFGNGDPPENGEAF 536


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 19.8 bits (39), Expect = 8.6
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +3

Query: 183 GAGDIKITKDGNVLLHEMQIQHP 251
           G+     T  G  LLH +  QHP
Sbjct: 177 GSTGTTTTSTGTRLLHGILSQHP 199


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 19.8 bits (39), Expect = 8.6
 Identities = 10/42 (23%), Positives = 21/42 (50%)
 Frame = +3

Query: 51  LLNPKAEFARAAQALAVNISAAKGIQDVMKTNLGPKGTMRML 176
           L+N +     A + + ++  +    Q +M + +GPK  +R L
Sbjct: 303 LINGRRRIIFARREVILSAGSVNTPQLLMLSGIGPKEHLRSL 344


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,996
Number of Sequences: 438
Number of extensions: 1813
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7093251
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)