Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0671
(325 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g16070.1 68418.m01878 chaperonin, putative similar to SWISS-P... 122 6e-29
At3g02530.1 68416.m00241 chaperonin, putative similar to SWISS-P... 122 6e-29
At5g26360.1 68418.m03151 chaperonin, putative similar to SWISS-P... 73 4e-14
At3g18190.1 68416.m02314 chaperonin, putative similar to SWISS-P... 68 1e-12
At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit / TCP... 65 9e-12
At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit, pu... 63 5e-11
At3g03960.1 68416.m00415 chaperonin, putative similar to SWISS-P... 60 3e-10
At3g11830.1 68416.m01450 chaperonin, putative similar to SWISS-P... 59 6e-10
At5g20890.1 68418.m02481 chaperonin, putative similar to SWISS-P... 53 4e-08
At3g23990.1 68416.m03013 chaperonin (CPN60) (HSP60) identical to... 46 4e-06
At2g33210.1 68415.m04069 chaperonin, putative similar to SWISS-P... 46 8e-06
At5g56500.1 68418.m07051 chaperonin, putative similar to SWISS-P... 44 2e-05
At3g13470.1 68416.m01695 chaperonin, putative similar SWISS-PROT... 44 3e-05
At1g55490.2 68414.m06348 RuBisCO subunit binding-protein beta su... 44 3e-05
At1g55490.1 68414.m06347 RuBisCO subunit binding-protein beta su... 44 3e-05
At3g13860.1 68416.m01751 chaperonin, putative similar to SWISS-P... 41 2e-04
At1g26230.1 68414.m03200 chaperonin, putative similar to SWISS-P... 39 7e-04
At2g28000.1 68415.m03393 RuBisCO subunit binding-protein alpha s... 33 0.058
At3g45530.1 68416.m04917 DC1 domain-containing protein contains ... 29 0.71
At1g67760.1 68414.m07732 T-complex protein 1 epsilon subunit, pu... 29 0.71
At1g30710.1 68414.m03754 FAD-binding domain-containing protein s... 29 0.94
At5g40780.2 68418.m04951 lysine and histidine specific transport... 27 2.2
At5g40780.1 68418.m04950 lysine and histidine specific transport... 27 2.2
At5g49110.1 68418.m06079 expressed protein ; expression support... 27 2.9
At3g02060.1 68416.m00169 DEAD/DEAH box helicase, putative simila... 27 3.8
At1g24360.1 68414.m03072 3-oxoacyl-[acyl-carrier protein] reduct... 27 3.8
At1g51690.2 68414.m05825 serine/threonine protein phosphatase 2A... 26 6.7
At1g51690.1 68414.m05824 serine/threonine protein phosphatase 2A... 26 6.7
>At5g16070.1 68418.m01878 chaperonin, putative similar to
SWISS-PROT:P80317 T-complex protein 1, zeta subunit
(TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 535
Score = 122 bits (294), Expect = 6e-29
Identities = 56/93 (60%), Positives = 74/93 (79%)
Frame = +3
Query: 42 AISLLNPKAEFARAAQALAVNISAAKGIQDVMKTNLGPKGTMRMLVSGAGDIKITKDGNV 221
++ +LNP AE + AL + I+AAKG+QDV+K+NLGPKGT++MLV G+GDIK+TKDGN
Sbjct: 2 SVRVLNPNAEVLNKSAALHMTINAAKGLQDVLKSNLGPKGTIKMLVGGSGDIKLTKDGNT 61
Query: 222 LLHEMQIQHPTASLIARASTTQNDAPGNGTTFT 320
LL EMQIQ+PTA +IAR + Q+D G+GTT T
Sbjct: 62 LLKEMQIQNPTAIMIARTAVAQDDISGDGTTST 94
>At3g02530.1 68416.m00241 chaperonin, putative similar to
SWISS-PROT:P80317- T-complex protein 1, zeta subunit
(TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 535
Score = 122 bits (294), Expect = 6e-29
Identities = 56/93 (60%), Positives = 74/93 (79%)
Frame = +3
Query: 42 AISLLNPKAEFARAAQALAVNISAAKGIQDVMKTNLGPKGTMRMLVSGAGDIKITKDGNV 221
++ +LNP AE + AL + I+AAKG+QDV+K+NLGPKGT++MLV G+GDIK+TKDGN
Sbjct: 2 SVRVLNPNAEVLNKSAALHMTINAAKGLQDVLKSNLGPKGTIKMLVGGSGDIKLTKDGNT 61
Query: 222 LLHEMQIQHPTASLIARASTTQNDAPGNGTTFT 320
LL EMQIQ+PTA +IAR + Q+D G+GTT T
Sbjct: 62 LLKEMQIQNPTAIMIARTAVAQDDISGDGTTST 94
>At5g26360.1 68418.m03151 chaperonin, putative similar to
SWISS-PROT:P50143- T-complex protein 1, gamma subunit
(TCP-1-gamma) [Xenopus laevis]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 555
Score = 72.9 bits (171), Expect = 4e-14
Identities = 29/71 (40%), Positives = 46/71 (64%)
Frame = +3
Query: 102 NISAAKGIQDVMKTNLGPKGTMRMLVSGAGDIKITKDGNVLLHEMQIQHPTASLIARAST 281
NI A+K + D+++T LGP+ ++ML+ G I +T DGN +L E+ + HP A + S
Sbjct: 24 NIQASKAVADIIRTTLGPRSMLKMLLDAGGGIVVTNDGNAILRELDVAHPAAKSMIELSR 83
Query: 282 TQNDAPGNGTT 314
TQ++ G+GTT
Sbjct: 84 TQDEEVGDGTT 94
>At3g18190.1 68416.m02314 chaperonin, putative similar to
SWISS-PROT:P50991- T-complex protein 1, delta subunit
(TCP-1-delta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 536
Score = 68.1 bits (159), Expect = 1e-12
Identities = 27/71 (38%), Positives = 49/71 (69%)
Frame = +3
Query: 102 NISAAKGIQDVMKTNLGPKGTMRMLVSGAGDIKITKDGNVLLHEMQIQHPTASLIARAST 281
NI++A+ + D ++T+LGPKG +M+ + G++ IT DG +L++M++ P A ++ S
Sbjct: 33 NINSARAVSDAVRTSLGPKGMDKMISTANGEVIITNDGATILNKMEVLQPAAKMLVELSK 92
Query: 282 TQNDAPGNGTT 314
+Q+ A G+GTT
Sbjct: 93 SQDSAAGDGTT 103
>At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit /
TCP-1-alpha / chaperonin (CCT1) identical to
SWISS-PROT:P28769- T-complex protein 1, alpha subunit
(TCP-1-alpha) [Arabidopsis thaliana]
Length = 545
Score = 65.3 bits (152), Expect = 9e-12
Identities = 26/71 (36%), Positives = 45/71 (63%)
Frame = +3
Query: 102 NISAAKGIQDVMKTNLGPKGTMRMLVSGAGDIKITKDGNVLLHEMQIQHPTASLIARAST 281
N+ A + + +++KT+LGP G +MLV GD+ IT DG +L ++++HP A ++ +
Sbjct: 24 NVMACQAVSNIVKTSLGPVGLDKMLVDDIGDVTITNDGATILRMLEVEHPAAKVLVELAE 83
Query: 282 TQNDAPGNGTT 314
Q+ G+GTT
Sbjct: 84 LQDREVGDGTT 94
>At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 535
Score = 62.9 bits (146), Expect = 5e-11
Identities = 30/79 (37%), Positives = 46/79 (58%)
Frame = +3
Query: 78 RAAQALAVNISAAKGIQDVMKTNLGPKGTMRMLVSGAGDIKITKDGNVLLHEMQIQHPTA 257
R A NI+A K + +++++LGPKG +ML GDI IT DG +L +M + + A
Sbjct: 25 RGIDAQKANIAAGKAVARILRSSLGPKGMDKMLQGPDGDITITNDGATILEQMDVDNQIA 84
Query: 258 SLIARASTTQNDAPGNGTT 314
L+ S +Q+ G+GTT
Sbjct: 85 KLMVELSRSQDYEIGDGTT 103
>At3g03960.1 68416.m00415 chaperonin, putative similar to
SWISS-PROT:P42932- T-complex protein 1, theta subunit
(TCP-1-theta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 549
Score = 60.5 bits (140), Expect = 3e-10
Identities = 25/78 (32%), Positives = 46/78 (58%)
Frame = +3
Query: 87 QALAVNISAAKGIQDVMKTNLGPKGTMRMLVSGAGDIKITKDGNVLLHEMQIQHPTASLI 266
+A+ NI A K + + +T+LGP G +M+++ + +T D +++E++IQHP A L+
Sbjct: 27 EAVIKNIEACKELSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEIQHPAAKLL 86
Query: 267 ARASTTQNDAPGNGTTFT 320
A+ Q + G+G T
Sbjct: 87 VLAAKAQQEEIGDGANLT 104
>At3g11830.1 68416.m01450 chaperonin, putative similar to
SWISS-PROT:P80313 T-complex protein 1, eta subunit
(TCP-1-eta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 557
Score = 59.3 bits (137), Expect = 6e-10
Identities = 27/90 (30%), Positives = 49/90 (54%)
Frame = +3
Query: 45 ISLLNPKAEFARAAQALAVNISAAKGIQDVMKTNLGPKGTMRMLVSGAGDIKITKDGNVL 224
I LL + ++ L NI+A + DV++T LGP+G +++ G + I+ DG +
Sbjct: 9 IILLKEGTDTSQGKAQLVSNINACTAVGDVVRTTLGPRGMDKLIHDDKGSVTISNDGATI 68
Query: 225 LHEMQIQHPTASLIARASTTQNDAPGNGTT 314
+ + I HP A ++ + +Q+ G+GTT
Sbjct: 69 MKLLDIVHPAAKILVDIAKSQDSEVGDGTT 98
>At5g20890.1 68418.m02481 chaperonin, putative similar to
SWISS-PROT:P78371- T-complex protein 1, beta subunit
(TCP-1-beta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 527
Score = 53.2 bits (122), Expect = 4e-08
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Frame = +3
Query: 78 RAAQALAVNISAAKGIQDVMKTNLGPKGTMRMLVS-GAGD-IKITKDGNVLLHEMQIQHP 251
+ +A + A I D++K+ LGPKG ++L S G G + +T DG +L + I +P
Sbjct: 15 KGERARMASFVGAMAISDLVKSTLGPKGMDKILQSTGRGHAVTVTNDGATILKSLHIDNP 74
Query: 252 TASLIARASTTQNDAPGNGTT 314
A ++ S Q+D G+GTT
Sbjct: 75 AAKVLVDISKVQDDEVGDGTT 95
>At3g23990.1 68416.m03013 chaperonin (CPN60) (HSP60) identical to
SWISS-PROT:P29197- chaperonin CPN60, mitochondrial
precursor (HSP60) [Arabidopsis thaliana]
Length = 577
Score = 46.4 bits (105), Expect = 4e-06
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Frame = +3
Query: 69 EFARAAQALAVNISAAKGIQDVMKTNLGPKGTMRMLVSGAGDIKITKDGNVLLHEMQ--- 239
E +A A+ + + + D +K +GPKG ++ G K+TKDG + ++
Sbjct: 35 EIKFGVEARALMLKGVEDLADAVKVTMGPKGRNVVIEQSWGAPKVTKDGVTVAKSIEFKD 94
Query: 240 -IQHPTASLIARASTTQNDAPGNGTT 314
I++ ASL+ + + ND G+GTT
Sbjct: 95 KIKNVGASLVKQVANATNDVAGDGTT 120
>At2g33210.1 68415.m04069 chaperonin, putative similar to
SWISS-PROT:Q05046- chaperonin CPN60-2, mitochondrial
precursor (HSP60-2) [Cucurbita maxima]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 585
Score = 45.6 bits (103), Expect = 8e-06
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 4/80 (5%)
Frame = +3
Query: 87 QALAVNISAAKGIQDVMKTNLGPKGTMRMLVSGAGDIKITKDGNVLLHEMQ----IQHPT 254
+A A+ + + + D +K +GPKG ++ G K+TKDG + ++ I++
Sbjct: 42 EARALMLRGVEDLADAVKVTMGPKGRNVIIEQSWGAPKVTKDGVTVAKSIEFKDRIKNVG 101
Query: 255 ASLIARASTTQNDAPGNGTT 314
ASL+ + + ND G+GTT
Sbjct: 102 ASLVKQVANATNDVAGDGTT 121
>At5g56500.1 68418.m07051 chaperonin, putative similar to
SWISS-PROT:P08927- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 597
Score = 44.0 bits (99), Expect = 2e-05
Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 4/68 (5%)
Frame = +3
Query: 123 IQDVMKTNLGPKGTMRMLVSGAGDIKITKDGNVLLHEMQIQHPT----ASLIARASTTQN 290
+ D++ LGPKG +L S G +I DG + E++++ P A L+ +A++ N
Sbjct: 74 LADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVELEDPVENIGAKLVRQAASKTN 133
Query: 291 DAPGNGTT 314
D G+GTT
Sbjct: 134 DLAGDGTT 141
>At3g13470.1 68416.m01695 chaperonin, putative similar
SWISS-PROT:P21240- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Arabidopsis thaliana]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 596
Score = 43.6 bits (98), Expect = 3e-05
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Frame = +3
Query: 123 IQDVMKTNLGPKGTMRMLVSGAGDIKITKDGNVLLHEMQIQHPT----ASLIARASTTQN 290
+ D++ LGPKG +L S G +I DG + E++++ P A L+ +A+ N
Sbjct: 74 LADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVELEDPVENIGAKLVRQAAAKTN 133
Query: 291 DAPGNGTT 314
D G+GTT
Sbjct: 134 DLAGDGTT 141
>At1g55490.2 68414.m06348 RuBisCO subunit binding-protein beta
subunit, chloroplast / 60 kDa chaperonin beta subunit /
CPN-60 beta identical to SWISS-PROT:P21240- RuBisCO
subunit binding-protein beta subunit, chloroplast
precursor (60 kDa chaperonin beta subunit, CPN-60 beta)
[Arabidopsis thaliana]
Length = 600
Score = 43.6 bits (98), Expect = 3e-05
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Frame = +3
Query: 123 IQDVMKTNLGPKGTMRMLVSGAGDIKITKDGNVLLHEMQIQHPT----ASLIARASTTQN 290
+ D++ LGPKG +L S G +I DG + E++++ P A L+ +A+ N
Sbjct: 78 LADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVELEDPVENIGAKLVRQAAAKTN 137
Query: 291 DAPGNGTT 314
D G+GTT
Sbjct: 138 DLAGDGTT 145
>At1g55490.1 68414.m06347 RuBisCO subunit binding-protein beta
subunit, chloroplast / 60 kDa chaperonin beta subunit /
CPN-60 beta identical to SWISS-PROT:P21240- RuBisCO
subunit binding-protein beta subunit, chloroplast
precursor (60 kDa chaperonin beta subunit, CPN-60 beta)
[Arabidopsis thaliana]
Length = 600
Score = 43.6 bits (98), Expect = 3e-05
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Frame = +3
Query: 123 IQDVMKTNLGPKGTMRMLVSGAGDIKITKDGNVLLHEMQIQHPT----ASLIARASTTQN 290
+ D++ LGPKG +L S G +I DG + E++++ P A L+ +A+ N
Sbjct: 78 LADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVELEDPVENIGAKLVRQAAAKTN 137
Query: 291 DAPGNGTT 314
D G+GTT
Sbjct: 138 DLAGDGTT 145
>At3g13860.1 68416.m01751 chaperonin, putative similar to
SWISS-PROT:P29197- chaperonin CPN60, mitochondrial
precursor (HSP60) [Arabidopsis thaliana] ; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 572
Score = 40.7 bits (91), Expect = 2e-04
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Frame = +3
Query: 90 ALAVNISAAKGIQDVMKTNLGPKGTMRMLVSGAGDIKITKDGNVLLHEMQIQHPT----A 257
A A + + + +K +GPKG ++ S G KITKDG + + Q A
Sbjct: 42 ARAAMLQGVSEVAEAVKVTMGPKGRNVIIESSYGGPKITKDGVTVAKSISFQAKAKNIGA 101
Query: 258 SLIARASTTQNDAPGNGTT 314
L+ + ++ N G+GTT
Sbjct: 102 ELVKQVASATNKVAGDGTT 120
>At1g26230.1 68414.m03200 chaperonin, putative similar to
SWISS-PROT:P08927- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 611
Score = 39.1 bits (87), Expect = 7e-04
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Frame = +3
Query: 108 SAAKGIQDVMKTNLGPKGTMRMLVSGAGDIKITKDGNVLLHEMQIQHPT----ASLIARA 275
+ A + ++ LGPKG +L + G +I DG +L E++++ P L+ +A
Sbjct: 57 AGADMVAKLLGVTLGPKGRNVVLQNKYGPPRIVNDGETVLKEIELEDPLENVGVKLVRQA 116
Query: 276 STTQNDAPGNGTT 314
ND G+G+T
Sbjct: 117 GAKTNDLAGDGST 129
>At2g28000.1 68415.m03393 RuBisCO subunit binding-protein alpha
subunit, chloroplast / 60 kDa chaperonin alpha subunit /
CPN-60 alpha identical to SWISS-PROT:P21238- RuBisCO
subunit binding-protein alpha subunit, chloroplast
precursor (60 kDa chaperonin alpha subunit, CPN-60
alpha) [Arabidopsis thaliana]
Length = 586
Score = 32.7 bits (71), Expect = 0.058
Identities = 18/68 (26%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Frame = +3
Query: 123 IQDVMKTNLGPKGTMRMLVSGAGDIKITKDGNVLLHEMQI----QHPTASLIARASTTQN 290
+ D + LGP+G +++ G K+ DG + +++ ++ A+LI ++ N
Sbjct: 68 LADCVGLTLGPRGR-NVVLDEFGSPKVVNDGVTIARAIELPNAMENAGAALIREVASKTN 126
Query: 291 DAPGNGTT 314
D+ G+GTT
Sbjct: 127 DSAGDGTT 134
>At3g45530.1 68416.m04917 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 692
Score = 29.1 bits (62), Expect = 0.71
Identities = 12/45 (26%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = -3
Query: 194 VPSTRNQHPH-RAFGTKVSFHYILNSFSCGYIYSKCLCSTSELGF 63
+P+ R+ P + ++ +I+ S+ G +Y C C +S+LG+
Sbjct: 609 LPNNRSTRPLCNSCHSRCPGSFIMKSYDGGEVYCSCYCVSSQLGY 653
>At1g67760.1 68414.m07732 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative similar to chaperonin containing TCP-1 (CCT)
epsilon subunit [Tetrahymena pyriformis] GI:15824416,
SP|P80316 T-complex protein 1, epsilon subunit
(TCP-1-epsilon) (CCT-epsilon) {Mus musculus}
Length = 142
Score = 29.1 bits (62), Expect = 0.71
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +3
Query: 78 RAAQALAVNISAAKGIQDVMKTNLGPKG 161
+ A NISA K + +++++LGPKG
Sbjct: 25 KGIDAQKANISAGKAVARILRSSLGPKG 52
>At1g30710.1 68414.m03754 FAD-binding domain-containing protein
similar to SP|P30986 reticuline oxidase precursor
(Berberine-bridge-forming enzyme) (BBE)
(Tetrahydroprotoberberine synthase) [Eschscholzia
californica]; contains PF01565 FAD binding domain
Length = 531
Score = 28.7 bits (61), Expect = 0.94
Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Frame = -3
Query: 194 VPSTRNQHPHRAFGTKVSFHYILNSFSCGYIYSK-CLCSTSEL 69
+PST PHRA G Y N F G +K CL T L
Sbjct: 415 IPSTETAFPHRA-GNMFKIQYAANWFVPGEAVAKDCLSQTERL 456
>At5g40780.2 68418.m04951 lysine and histidine specific transporter,
putative strong similarity to lysine and histidine
specific transporter GI:2576361 from [Arabidopsis
thaliana]; contains Pfam profile PF01490: Transmembrane
amino acid transporter protein
Length = 445
Score = 27.5 bits (58), Expect = 2.2
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Frame = +3
Query: 30 NEMAAISLLNPKAEFARAAQALAVNISAAKGIQDVMKTNLGPK---GTMRMLVSGAGDIK 200
N ++ +SL A + + +A SA+KG+Q+ ++ K GT+ SG GD+
Sbjct: 178 NSISGVSLA--AAVMSLSYSTIAWASSASKGVQEDVQYGYKAKTTAGTVFNFFSGLGDVA 235
Query: 201 ITKDGNVLLHEMQIQHPT 254
G+ ++ E+Q P+
Sbjct: 236 FAYAGHNVVLEIQATIPS 253
>At5g40780.1 68418.m04950 lysine and histidine specific transporter,
putative strong similarity to lysine and histidine
specific transporter GI:2576361 from [Arabidopsis
thaliana]; contains Pfam profile PF01490: Transmembrane
amino acid transporter protein
Length = 446
Score = 27.5 bits (58), Expect = 2.2
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Frame = +3
Query: 30 NEMAAISLLNPKAEFARAAQALAVNISAAKGIQDVMKTNLGPK---GTMRMLVSGAGDIK 200
N ++ +SL A + + +A SA+KG+Q+ ++ K GT+ SG GD+
Sbjct: 179 NSISGVSLA--AAVMSLSYSTIAWASSASKGVQEDVQYGYKAKTTAGTVFNFFSGLGDVA 236
Query: 201 ITKDGNVLLHEMQIQHPT 254
G+ ++ E+Q P+
Sbjct: 237 FAYAGHNVVLEIQATIPS 254
>At5g49110.1 68418.m06079 expressed protein ; expression supported by
MPSS
Length = 1487
Score = 27.1 bits (57), Expect = 2.9
Identities = 15/55 (27%), Positives = 31/55 (56%)
Frame = +3
Query: 18 ENVLNEMAAISLLNPKAEFARAAQALAVNISAAKGIQDVMKTNLGPKGTMRMLVS 182
E+ + +++ L+N K ++AAQ L + + K + ++K + PKG ++L S
Sbjct: 1208 ESTVRILSSFVLMNLKE--SQAAQFLRLAVRFYKQLAQIVKLRIAPKGCKQILPS 1260
>At3g02060.1 68416.m00169 DEAD/DEAH box helicase, putative similar
to C-terminal half of transcription-repair coupling
factor (TRCF) GB:Q55750 [Synechocystis PCC6803];
contains Pfam profile: helicases conserved C-terminal
domain
Length = 823
Score = 26.6 bits (56), Expect = 3.8
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Frame = +3
Query: 33 EMAAISLLNPKAEFARAAQALAVNISAAKGIQDVMKTNLGPKGTMRMLVSGAGDI---KI 203
E ++ ++ K R A L VN A G VMKTN+ K + S D+ +
Sbjct: 723 EPYSMEIILKKLYVRRMAADLGVNRIYASGKMVVMKTNMSKKVFKLITDSMTCDVYRSSL 782
Query: 204 TKDGNVLLHEMQIQHPTASLI 266
+G+ ++ E+ ++ P L+
Sbjct: 783 IYEGDQIMAELLLELPREQLL 803
>At1g24360.1 68414.m03072 3-oxoacyl-[acyl-carrier protein]
reductase, chloroplast / 3-ketoacyl-acyl carrier protein
reductase identical to 3-oxoacyl-[acyl-carrier protein]
reductase SP:P33207 from [Arabidopsis thaliana]
Length = 319
Score = 26.6 bits (56), Expect = 3.8
Identities = 19/59 (32%), Positives = 31/59 (52%)
Frame = +3
Query: 69 EFARAAQALAVNISAAKGIQDVMKTNLGPKGTMRMLVSGAGDIKITKDGNVLLHEMQIQ 245
E+ A ++S A + +MKT L GT+ ++V+ AG IT+D +L+ Q Q
Sbjct: 123 EYGGQAITFGGDVSKATDVDAMMKTALDKWGTIDVVVNNAG---ITRD-TLLIRMKQSQ 177
>At1g51690.2 68414.m05825 serine/threonine protein phosphatase 2A
(PP2A) 55 kDa regulatory subunit B identical to 55 kDa B
regulatory subunit of phosphatase 2A (GI:710330)
[Arabidopsis thaliana]; similar to type 2A protein
serine/threonine phosphatase 55 kDa B regulatory
GI:1408460 [Arabidopsis thaliana]; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies, 3 weak)
Length = 512
Score = 25.8 bits (54), Expect = 6.7
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +3
Query: 150 GPKGTMRMLVSGAGDIKITKDGNVLL 227
GPK +++ DIK K+G LL
Sbjct: 332 GPKSFFTEIIASVSDIKFAKEGRYLL 357
>At1g51690.1 68414.m05824 serine/threonine protein phosphatase 2A
(PP2A) 55 kDa regulatory subunit B identical to 55 kDa B
regulatory subunit of phosphatase 2A (GI:710330)
[Arabidopsis thaliana]; similar to type 2A protein
serine/threonine phosphatase 55 kDa B regulatory
GI:1408460 [Arabidopsis thaliana]; contains Pfam
PF00400: WD domain, G-beta repeat (5 copies, 3 weak)
Length = 513
Score = 25.8 bits (54), Expect = 6.7
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +3
Query: 150 GPKGTMRMLVSGAGDIKITKDGNVLL 227
GPK +++ DIK K+G LL
Sbjct: 333 GPKSFFTEIIASVSDIKFAKEGRYLL 358
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,096,288
Number of Sequences: 28952
Number of extensions: 135046
Number of successful extensions: 386
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 384
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 360538848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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