Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0669
         (849 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-...    35   2.2  
UniRef50_Q7TFQ5 Cluster: Rh76; n=3; Cercopithecine herpesvirus 8...    34   5.2  
UniRef50_P16784 Cluster: Capsid assembly protein UL47; n=4; Cyto...    34   5.2  
UniRef50_A7JUE6 Cluster: [protein-PII] uridylyltransferase; n=1;...    33   9.1  
UniRef50_A6SU54 Cluster: Transcriptional regulator, GntR family;...    33   9.1  

>UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-like
            protein; n=25; Arthropoda|Rep: Endonuclease and reverse
            transcriptase-like protein - Bombyx mori (Silk moth)
          Length = 986

 Score = 35.1 bits (77), Expect = 2.2
 Identities = 15/18 (83%), Positives = 16/18 (88%)
 Frame = +2

Query: 725  GRQRLGSPPGIADVHERR 778
            GRQRLGS PGIA+VH RR
Sbjct: 969  GRQRLGSAPGIAEVHGRR 986


>UniRef50_Q7TFQ5 Cluster: Rh76; n=3; Cercopithecine herpesvirus
           8|Rep: Rh76 - Rhesus cytomegalovirus (strain 68-1)
           (RhCMV)
          Length = 958

 Score = 33.9 bits (74), Expect = 5.2
 Identities = 15/50 (30%), Positives = 28/50 (56%)
 Frame = +1

Query: 190 KVINAIYNRYFFFLCLSIYGRTRYISLCQQFVMSSVTNTIVASTSCLRLL 339
           ++I AIYN Y FF+CL +Y  T      ++ ++    +T++ S   L+ +
Sbjct: 413 QLIVAIYNTYVFFMCLWVYSPTFLFIHRRKIILEQQRSTLIGSRRELQFI 462


>UniRef50_P16784 Cluster: Capsid assembly protein UL47; n=4;
           Cytomegalovirus|Rep: Capsid assembly protein UL47 -
           Human cytomegalovirus (strain AD169) (HHV-5) (Human
           herpesvirus 5)
          Length = 983

 Score = 33.9 bits (74), Expect = 5.2
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +1

Query: 190 KVINAIYNRYFFFLCLSIYGRTRYISLCQQFVMSSVTNTIVAS 318
           K+I  IYN Y FF+CL +Y  T      ++ ++    +T++ S
Sbjct: 419 KLIQIIYNFYTFFMCLYVYSPTFLFDHRRRLILEQHRSTLIGS 461


>UniRef50_A7JUE6 Cluster: [protein-PII] uridylyltransferase; n=1;
           Mannheimia haemolytica PHL213|Rep: [protein-PII]
           uridylyltransferase - Mannheimia haemolytica PHL213
          Length = 855

 Score = 33.1 bits (72), Expect = 9.1
 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 6/57 (10%)
 Frame = +1

Query: 94  FKGLYCSQWRPLRISFLYFKLFYIYVLN*HTVKVINAIYN------RYFFFLCLSIY 246
           F   Y  QW+ +    + F LF+IY ++ HTV+V+  + N      R FF LC  ++
Sbjct: 414 FLSAYLPQWKGIE-GLMQFDLFHIYTVDEHTVRVMLNLENFSEDPSRAFFPLCHQLF 469


>UniRef50_A6SU54 Cluster: Transcriptional regulator, GntR family;
           n=1; Janthinobacterium sp. Marseille|Rep:
           Transcriptional regulator, GntR family -
           Janthinobacterium sp. (strain Marseille) (Minibacterium
           massiliensis)
          Length = 258

 Score = 33.1 bits (72), Expect = 9.1
 Identities = 20/65 (30%), Positives = 33/65 (50%)
 Frame = -3

Query: 460 VIGLGRTSSVVSQ*RLCFEFIATVRQRRTGCKTSSEPVDYPTALDMRSKLQLYLLRNS*R 281
           V G GRT    +  +LCFE +  V+ +R    T  +PV     L++R ++   + +N+ R
Sbjct: 65  VAGFGRTPVREAVRKLCFEHLLVVKPKRGIYVTEVDPVAQLRLLEVRREIDRLVFQNAAR 124

Query: 280 IADRE 266
            A  E
Sbjct: 125 RATPE 129


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 851,164,381
Number of Sequences: 1657284
Number of extensions: 17430312
Number of successful extensions: 37204
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 35892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37198
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 74603367202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)