Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0669
         (849 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83239-8|CAH60787.1|  311|Caenorhabditis elegans Hypothetical pr...    30   1.8  
AL033514-5|CAA22082.1|  773|Caenorhabditis elegans Hypothetical ...    28   7.3  
Z93778-7|CAB07847.1|  800|Caenorhabditis elegans Hypothetical pr...    28   9.6  
Z81532-9|CAB04328.1|  800|Caenorhabditis elegans Hypothetical pr...    28   9.6  
U73476-1|AAB41492.1|  800|Caenorhabditis elegans cyclic nucleoti...    28   9.6  

>Z83239-8|CAH60787.1|  311|Caenorhabditis elegans Hypothetical
           protein T09F5.16 protein.
          Length = 311

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = +1

Query: 148 FKLFYIYVLN*HTVKVINAIYNRYFFF-LCLSIYGRTRYISL 270
           F +F  +  +   ++++NAIY  YFFF L ++ +G T ++ L
Sbjct: 45  FPVFNHFYKSIKKIQIVNAIYILYFFFTLFMAFFGATFFVFL 86


>AL033514-5|CAA22082.1|  773|Caenorhabditis elegans Hypothetical
           protein Y75B8A.4 protein.
          Length = 773

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -1

Query: 810 GIRPXLMVSGHRRSWTSAMPG 748
           GIR    + GHRR++ +AMPG
Sbjct: 364 GIRDESDIRGHRRTYVAAMPG 384


>Z93778-7|CAB07847.1|  800|Caenorhabditis elegans Hypothetical
           protein F36F2.5 protein.
          Length = 800

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -3

Query: 799 PPDGKWSPSLMDVSNARGGAKPLPTINPVNTCFGFLL 689
           P   +  PSLM +   +  ++  PT++ V  CFGF L
Sbjct: 175 PKQNEHRPSLMSLIGLQNRSES-PTVDTVKNCFGFSL 210


>Z81532-9|CAB04328.1|  800|Caenorhabditis elegans Hypothetical
           protein F36F2.5 protein.
          Length = 800

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -3

Query: 799 PPDGKWSPSLMDVSNARGGAKPLPTINPVNTCFGFLL 689
           P   +  PSLM +   +  ++  PT++ V  CFGF L
Sbjct: 175 PKQNEHRPSLMSLIGLQNRSES-PTVDTVKNCFGFSL 210


>U73476-1|AAB41492.1|  800|Caenorhabditis elegans cyclic
           nucleotide-gated channel protein.
          Length = 800

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -3

Query: 799 PPDGKWSPSLMDVSNARGGAKPLPTINPVNTCFGFLL 689
           P   +  PSLM +   +  ++  PT++ V  CFGF L
Sbjct: 175 PKQNEHRPSLMSLIGLQNRSES-PTVDTVKNCFGFSL 210


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,580,546
Number of Sequences: 27780
Number of extensions: 424825
Number of successful extensions: 872
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2108493618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)