Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0668
         (775 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux transporte...    32   0.10 
SPBC16D10.07c |sir2||Sir2 family histone deacetylase Sir2|Schizo...    27   3.0  
SPBC887.15c |||sphingosine hydroxylase |Schizosaccharomyces pomb...    27   3.0  
SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces ...    27   3.0  
SPBC1271.02 |stt3||oligosaccharyltransferase subunit Stt3|Schizo...    26   5.2  
SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|...    25   9.1  
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     25   9.1  

>SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 531

 Score = 31.9 bits (69), Expect = 0.10
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = +2

Query: 302 SFCQSIHINKIGVSVCNIEITAFYYMHMNIYTYGTYTKITFFTIFVSLSVCL 457
           S C  +++ K G    N+ I  F++M M I ++   T     T  + +S+CL
Sbjct: 344 SLCSGLYMKKTG-RYRNLVIAGFFFMLMGIVSFAVLTSFGHRTPLILISLCL 394


>SPBC16D10.07c |sir2||Sir2 family histone deacetylase
           Sir2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -2

Query: 513 PVSESPVKIGPAVPEISRNKHTDRETKIVKNVILVYVPYVYIFIC 379
           PVSE    I P  P+I  ++   R T+   N +  Y  +V + IC
Sbjct: 380 PVSELISVIPPTTPQIYISRTPVRHTQFDVNFLSPYCDWVIVEIC 424


>SPBC887.15c |||sphingosine hydroxylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 293

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +1

Query: 367 FLLHAYEYIYIRYIHQNNIFYN 432
           F++ +++Y + RY+H N   YN
Sbjct: 139 FIIDSWQYFWHRYLHYNKKLYN 160


>SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 495

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -2

Query: 528 LYHQLPVSESPVK-IGPAVPEISRNKHTDRETKIVKNVIL 412
           LYH L    SPV  + P +P + RN+  DR  KI++   L
Sbjct: 203 LYHDLDQGFSPVNFVFPWLP-LPRNRRRDRAHKIMQKTYL 241


>SPBC1271.02 |stt3||oligosaccharyltransferase subunit
           Stt3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 752

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -1

Query: 418 YFGVCTVCIYIHMHVVKSGYFNITNRHSNFIYMYRLAKR 302
           ++G CT  +Y +M     GY  ITN     +++  L  R
Sbjct: 199 FWGACTGLLYFYMVTAWGGYVFITNMIPLHVFVLLLMGR 237


>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 468

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 377 MHMNIYTYGTYTKITFFTIFVSLSVCLF 460
           MHM+I   G    +  F   ++ SVCLF
Sbjct: 314 MHMSIVQVGFINSVKTFGSLLTCSVCLF 341


>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = +2

Query: 329 KIGVSVCNIEITAFYYMHMNIYTYGT 406
           K  +S+ +I I+ F+Y+ +N+  +GT
Sbjct: 783 KFHLSLSHIRISLFFYIFINVAFFGT 808


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,859,673
Number of Sequences: 5004
Number of extensions: 56471
Number of successful extensions: 162
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)