Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0668
         (775 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_1123 + 9257674-9258126,9258205-9258972                           29   5.4  
02_01_0342 + 2451314-2451345,2451536-2451730,2452548-2452587           29   5.4  
01_01_1236 - 10020837-10021041,10021746-10021831,10022552-100230...    29   5.4  
02_04_0183 - 20723298-20724290                                         28   7.2  
04_04_0995 + 29985473-29985625,29986372-29986446,29986537-299870...    28   9.5  
03_06_0618 - 35132077-35132830,35133690-35135212                       28   9.5  

>06_01_1123 + 9257674-9258126,9258205-9258972
          Length = 406

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 394 YIRYIHQNNIFYNFCLSVCVFVPANLWN 477
           Y  + H+N   YN C+  C+  P ++WN
Sbjct: 367 YGHWAHENVTLYNDCVHWCLPGPVDVWN 394


>02_01_0342 + 2451314-2451345,2451536-2451730,2452548-2452587
          Length = 88

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +1

Query: 364 RFLLHAYEYIYIRYIHQNNIFYNFCLSVCVFV 459
           ++ L     ++ +Y+H+  IF NFC S+  F+
Sbjct: 13  KYHLKVLHVLFFQYMHRLEIFSNFCSSLVTFL 44


>01_01_1236 -
           10020837-10021041,10021746-10021831,10022552-10023061,
           10023914-10025965
          Length = 950

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -2

Query: 348 QTDTPILFICIDWQNELKTSHVEILIQI 265
           Q+D  +  I +D  NEL+TSH ++++ +
Sbjct: 291 QSDNNVKLIVLDRLNELRTSHRDVMVDV 318


>02_04_0183 - 20723298-20724290
          Length = 330

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = +2

Query: 128 PFFLRSTSSTLPYVLQFDRPIS*N**KSYTSISSQRLR 241
           PF LR   + LP  L  DRP++ +  + YT +SS R R
Sbjct: 96  PFLLRLLHALLPLFLPADRPLALD--RLYTLLSSVRAR 131


>04_04_0995 +
           29985473-29985625,29986372-29986446,29986537-29987044,
           29987349-29987734,29988418-29988641,29988728-29988893,
           29989095-29989226
          Length = 547

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -1

Query: 445 QRDKNCKKCYFGVCTVCIYI 386
           + +  C KC+F  CT C Y+
Sbjct: 337 ENNAQCSKCFFSFCTRCRYL 356


>03_06_0618 - 35132077-35132830,35133690-35135212
          Length = 758

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -1

Query: 409 VCTVCIYIHMHVVKSGYFNITNRHSNFIYMYR 314
           V T C  IH H VK+G    T   ++ I MYR
Sbjct: 401 VPTTCKQIHCHAVKTGLDQFTVSGNSQIAMYR 432


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,210,782
Number of Sequences: 37544
Number of extensions: 345207
Number of successful extensions: 763
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 763
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)