Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0668
         (775 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53762| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_44119| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.6  
SB_58298| Best HMM Match : Vicilin_N (HMM E-Value=0.48)                28   9.6  
SB_52868| Best HMM Match : Homeobox (HMM E-Value=1.6e-23)              28   9.6  

>SB_53762| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1010

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 14/51 (27%), Positives = 23/51 (45%)
 Frame = -1

Query: 433 NCKKCYFGVCTVCIYIHMHVVKSGYFNITNRHSNFIYMYRLAKRVEDVSRR 281
           +C  C F +CT C     H+V      +   H++ +Y +     V DV R+
Sbjct: 116 HCSLCEFDLCTSCFNPQRHLVHHHPLRVA--HTDIVYSHTDGNWVCDVCRQ 164


>SB_44119| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 637

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -2

Query: 510 VSESPVKIGPAVPEISRNKHTDRETKIVKNVILVYVPYVYIFI 382
           ++   V  GP+VPE   +     ET I+  +I++ + Y+ I I
Sbjct: 534 LTSDDVFFGPSVPETPISPFGGGETSIIIIIIVIIMTYIIIII 576


>SB_58298| Best HMM Match : Vicilin_N (HMM E-Value=0.48)
          Length = 204

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -1

Query: 103 CKRGVSEEMPRAELPAARGTTS*SGRHNGGSP 8
           C+R  +E++P+A+   A GTT+   RHN   P
Sbjct: 144 CRRR-NEQLPKAQRTTAEGTTNNCRRHNEQLP 174



 Score = 27.9 bits (59), Expect = 9.6
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -1

Query: 103 CKRGVSEEMPRAELPAARGTTS*SGRHNGGSP 8
           C+R  +E++P+A+   A GTT+   RHN   P
Sbjct: 166 CRRH-NEQLPKAQRTTAEGTTNNCRRHNEQLP 196


>SB_52868| Best HMM Match : Homeobox (HMM E-Value=1.6e-23)
          Length = 434

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
 Frame = +2

Query: 11  TPPVVAAALTSGPPGCR*FGTRHFFAHSSLTH--IVF-HEIYPFFLR-STSSTLPYV 169
           T P +A A T+ P       T H+  H+S TH  I +    +P   R ST +T PY+
Sbjct: 32  THPHIAHASTTHPYITHASTTHHYIVHASTTHPYITYASTTHPHIARASTPTTHPYI 88


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,871,803
Number of Sequences: 59808
Number of extensions: 399744
Number of successful extensions: 949
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 949
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2107953584
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)