Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0668
         (775 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g00780.1 68417.m00108 meprin and TRAF homology domain-contain...    28   7.9  
At1g58090.1 68414.m06583 F-box family protein contains F-box dom...    28   7.9  

>At4g00780.1 68417.m00108 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein contains Pfam
           profile PF00917: MATH domain
          Length = 299

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -2

Query: 579 VTPRGEASVKKVSLSYSLYHQLPVSESPVKIGPAVPEISRNKHT 448
           V P G  + K   +S  L +Q+PV++ P      V ++ R  HT
Sbjct: 56  VYPNGHKNAKGTHVSMFLVNQVPVNDMPTYELLVVSQLERKWHT 99


>At1g58090.1 68414.m06583 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 371

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 157 CRRGRPKKKWIDFVKDDMCKR 95
           C   RPK  W+  V+ D+CK+
Sbjct: 328 CPSKRPKAAWVYIVRGDLCKK 348


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,692,632
Number of Sequences: 28952
Number of extensions: 285247
Number of successful extensions: 706
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 706
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1726528800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)