Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0667
(676 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ... 28 1.4
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 1.9
SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyce... 27 3.3
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos... 26 5.7
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 26 5.7
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||... 26 5.7
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 25 7.6
SPCC777.04 |||amino acid transporter |Schizosaccharomyces pombe|... 25 10.0
>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 27.9 bits (59), Expect = 1.4
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +1
Query: 283 AMLDALGLILYRPNSTQLQVLRNSGKCKSAA 375
++ L +IL PNS++LQ LR G C + +
Sbjct: 544 SLFSTLRIILEHPNSSRLQKLRAPGLCPNGS 574
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.5 bits (58), Expect = 1.9
Identities = 22/86 (25%), Positives = 33/86 (38%), Gaps = 5/86 (5%)
Frame = +1
Query: 4 TANTTTMNVPPQVTGTMNGHSTSHSVDTRKRLTPIPDINTTGNHTPYKVQKALVENTMVP 183
T+ ++T PP + + G S+S + T T I TGN T ++ P
Sbjct: 362 TSTSSTSTPPPPASTSSTGTSSSPLLSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSSSTP 421
Query: 184 -----CINSKPYQYTELLMTLPDLAS 246
C S YT +T LA+
Sbjct: 422 LTTTNCTTSTSVPYTSTPVTSTPLAT 447
Score = 25.4 bits (53), Expect = 7.6
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = +1
Query: 4 TANTTTMNVPPQVTGTMNGHSTSHSVDTRKRLTPIPDINTTGNHT 138
T+ ++T PP + + G S+S T T I TGN T
Sbjct: 308 TSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNST 352
>SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 579
Score = 26.6 bits (56), Expect = 3.3
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = -3
Query: 179 TIVFSTNAFCTLYGVWLPVVLMSGIGVSLLRVSTE*EVEWPF-IVPVTCGGTFIVVVLAV 3
T F T+ C VW+ + L+ IG++L V EVE+ ++ V FI++ + +
Sbjct: 180 TFTFWTDVNCA---VWISIFLVVVIGINLFGVRVFGEVEFVLALIKVVATVGFIILAIII 236
>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
Length = 953
Score = 25.8 bits (54), Expect = 5.7
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +1
Query: 4 TANTTTMNVPPQVTGTMNGHSTSHSVDTRKRLTPIPDIN 120
T TT+ NVPP ++ S S S +L+PI N
Sbjct: 378 TVQTTSSNVPPVNRPSLKSKSPSVSNILSNQLSPISSAN 416
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 25.8 bits (54), Expect = 5.7
Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 2/84 (2%)
Frame = +1
Query: 13 TTTMNVPPQVTGTMNGHST--SHSVDTRKRLTPIPDINTTGNHTPYKVQKALVENTMVPC 186
T ++PP + +T ++T TPIP +++G P V+ V V
Sbjct: 26 TLLQDIPPGSLSENDNSTTFIKPPLETASSSTPIPSSSSSGVLNPSSVRGKPVACLFVAS 85
Query: 187 INSKPYQYTELLMTLPDLASHFFP 258
+NS + EL T+ D + P
Sbjct: 86 LNSSRSE-EELTATVKDYFQQWGP 108
>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1157
Score = 25.8 bits (54), Expect = 5.7
Identities = 23/112 (20%), Positives = 47/112 (41%), Gaps = 3/112 (2%)
Frame = +1
Query: 64 STSHSVDTRKRLTPIPDINTTG-NHTPYKVQKALVENTMVPCINSKPYQYTELLMTLPDL 240
S+ +SV+++ ++ I G N ++++ + + + + + + PD
Sbjct: 384 SSKYSVNSKAKMMSISTPMALGMNRGVLSFERSIEKRKNDYEVTGQSLSFVDDVSLTPDS 443
Query: 241 ASHFFPRVSLTTCRAMLDALG--LILYRPNSTQLQVLRNSGKCKSAAAGENG 390
A + V R + L LYRPNS L+ + + S ++GE G
Sbjct: 444 APKYAGHVVAVLNRPSGETCSGTLALYRPNSLALKNQSSHRRNSSTSSGETG 495
>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 486
Score = 25.4 bits (53), Expect = 7.6
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = +2
Query: 545 SWLKLLINTASLXNVSDYVEVLELAADLMLGWCLK 649
SWL L I+ + + ++ + EL +M+ CL+
Sbjct: 251 SWLPLFISMLAYPRMPTFLHIFELRYHIMIKKCLE 285
>SPCC777.04 |||amino acid transporter |Schizosaccharomyces pombe|chr
3|||Manual
Length = 521
Score = 25.0 bits (52), Expect = 10.0
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = -3
Query: 140 GVWLPVVLMSGIGVSLLRVSTE*EVE-WPFIVPVTCGGTFIVVVLAV 3
G+W+ V L+ + ++LL V EVE W V + T I+ + +
Sbjct: 160 GIWVAVFLVVILAINLLHVKYFGEVEFWLSAVKILVLVTLIITCIVI 206
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,186,409
Number of Sequences: 5004
Number of extensions: 34734
Number of successful extensions: 93
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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