Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0667
         (676 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56992| Best HMM Match : Copper-bind (HMM E-Value=0.82)              30   2.0  
SB_3595| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.0  
SB_13716| Best HMM Match : LIM (HMM E-Value=0)                         28   6.0  
SB_44860| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_56992| Best HMM Match : Copper-bind (HMM E-Value=0.82)
          Length = 1642

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 19/50 (38%), Positives = 28/50 (56%)
 Frame = +1

Query: 196 KPYQYTELLMTLPDLASHFFPRVSLTTCRAMLDALGLILYRPNSTQLQVL 345
           KP    EL++T  +++S   P VSL TC   +DAL ++      TQ QV+
Sbjct: 764 KPQLSNELVITCSEISSLGGPVVSLETC-GRVDALVIVWPAFPDTQFQVM 812


>SB_3595| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 182

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = -2

Query: 285 GAAGGERDAREEVAGEVRQGHQQLRVLVGLRIDA-RHHCVFH*RLLYL 145
           GA    + AR  V  EVR G++ + ++V   +D  R+HC F  RLLY+
Sbjct: 13  GAREAAKGARYSVCSEVR-GYEGIALVVIRVLDENRYHC-FRFRLLYI 58


>SB_13716| Best HMM Match : LIM (HMM E-Value=0)
          Length = 401

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 33/136 (24%), Positives = 54/136 (39%), Gaps = 7/136 (5%)
 Frame = +1

Query: 55  NGHSTSHSVDTRKRLTPIPDINTTGNHTPYKVQKALVE-NTMVPCINSKPYQYTE--LLM 225
           N H   H  +      P+PD+ T  N T   +   L E ++++  +    Y  TE  +  
Sbjct: 69  NSHHHHHGKEELPPPPPLPDLTTPSNTTSTVLAANLSELDSLLEDLGKPQYPSTESPIDA 128

Query: 226 TLPDLASHFF--PRVS--LTTCRAMLDALGLILYRPNSTQLQVLRNSGKCKSAAAGENGM 393
            L DL SH    P  S    T + M  ++  + ++P  +Q Q   N G            
Sbjct: 129 MLSDLDSHVMSPPPTSPHHQTSKPMQASVAQV-HQPMHSQAQ-YHNPGPANGTPGRTAST 186

Query: 394 ALVQVRDVMHHMLQFK 441
           A  ++ D+M  +  FK
Sbjct: 187 ATKELDDLMASLSDFK 202


>SB_44860| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 431

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = -2

Query: 150 YLIRRMVASSVDVWYRCKPFASVHGVRG*VAIHRAGHLRRHVHSC 16
           YL R ++  SV   ++C          G +  H+  H+R++ H C
Sbjct: 347 YLKRHLITHSVQKPHKCDECGKCFSQSGHLKRHKLIHMRQNPHKC 391


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,639,069
Number of Sequences: 59808
Number of extensions: 306708
Number of successful extensions: 937
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 937
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)