Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0667
         (676 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    25   0.50 
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   3.5  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   8.1  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 25.4 bits (53), Expect = 0.50
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 46  GTMNGHSTSHSVDTRKRLTPIP 111
           G++NG+ +S   D RK+  P P
Sbjct: 159 GSLNGYGSSDGCDARKKKGPTP 180


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 8/20 (40%), Positives = 9/20 (45%)
 Frame = +3

Query: 168 KHNGALHQFEALPVHGAADD 227
           KH    H  EA P H  + D
Sbjct: 271 KHEAGSHSCEACPAHSKSSD 290


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 8/33 (24%), Positives = 17/33 (51%)
 Frame = -2

Query: 108 YRCKPFASVHGVRG*VAIHRAGHLRRHVHSCCV 10
           Y+C+  +    V+  +++HR  H +   + C V
Sbjct: 120 YQCEYCSKSFSVKENLSVHRRIHTKERPYKCDV 152


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,875
Number of Sequences: 438
Number of extensions: 2379
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)