Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0666
         (630 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A5DJ01 Cluster: Putative uncharacterized protein; n=1; ...    36   0.80 
UniRef50_Q8TLZ4 Cluster: Formylmethanofuran dehydrogenase, subun...    34   3.2  
UniRef50_UPI000045C242 Cluster: hypothetical protein Npun0200881...    33   5.7  
UniRef50_Q9VNW8 Cluster: CG7458-PA; n=6; Sophophora|Rep: CG7458-...    33   5.7  

>UniRef50_A5DJ01 Cluster: Putative uncharacterized protein; n=1;
           Pichia guilliermondii|Rep: Putative uncharacterized
           protein - Pichia guilliermondii (Yeast) (Candida
           guilliermondii)
          Length = 245

 Score = 35.9 bits (79), Expect = 0.80
 Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = -3

Query: 232 RPL-SRIHYKNYYVTQK*SKIDRQIATFFFSFIAPPVSFMN*LTIKPSLTPSLVPNYL 62
           RPL S+IH  N  +T   SK + Q  T   SF+ P  S     ++KP L P L  +YL
Sbjct: 22  RPLQSKIHQLNELLTSFPSKTNLQYETPHKSFLHPKTSTQRLASLKPYLDPDLYQSYL 79


>UniRef50_Q8TLZ4 Cluster: Formylmethanofuran dehydrogenase, subunit
           B; n=4; Methanosarcinaceae|Rep: Formylmethanofuran
           dehydrogenase, subunit B - Methanosarcina acetivorans
          Length = 420

 Score = 33.9 bits (74), Expect = 3.2
 Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = -2

Query: 485 SNIKPHSKKLLSRTGYSRSTKFSKL*RPYGPKLSSIESKLISFLPSSILYGKFVF-RWPR 309
           SN +  ++ L   TGY  S KF      +GP+ S +ES     + ++++ G   F   PR
Sbjct: 287 SNTRGFNENLFEETGYVNSVKFEDGAVKHGPEYSIVESLKAKTVDAALIIGYDPFSSLPR 346

Query: 308 SVIKLL 291
           S+ K L
Sbjct: 347 SIAKNL 352


>UniRef50_UPI000045C242 Cluster: hypothetical protein Npun02008815;
           n=1; Nostoc punctiforme PCC 73102|Rep: hypothetical
           protein Npun02008815 - Nostoc punctiforme PCC 73102
          Length = 69

 Score = 33.1 bits (72), Expect = 5.7
 Identities = 16/25 (64%), Positives = 17/25 (68%)
 Frame = -3

Query: 97  PSLTPSLVPNYLQPGGXTSXRAAAT 23
           P  T  LV  +LQPGG TS RAAAT
Sbjct: 29  PRRTARLVIEFLQPGGSTSSRAAAT 53


>UniRef50_Q9VNW8 Cluster: CG7458-PA; n=6; Sophophora|Rep: CG7458-PA
           - Drosophila melanogaster (Fruit fly)
          Length = 572

 Score = 33.1 bits (72), Expect = 5.7
 Identities = 17/72 (23%), Positives = 29/72 (40%)
 Frame = +1

Query: 313 GHRNTNFPYKMEEGKKEINLDSILESLGPYGRXXXXXXXXXXXXXXXXXXFECGFIFEAQ 492
           GH +     +   G ++ +LD+IL  +G +GR                  F   ++F A 
Sbjct: 19  GHADAEAATQTAGGDEDNSLDAILVRIGQFGRYQIINYVLLCVPMLFNAFFSISYVFTAS 78

Query: 493 EQNYRCEVDGCE 528
              +RC V  C+
Sbjct: 79  TVVHRCTVPQCD 90


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 600,052,549
Number of Sequences: 1657284
Number of extensions: 11535824
Number of successful extensions: 25718
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 25030
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25709
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 46466611856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)