Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0666
         (630 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    22   3.7  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    22   3.7  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   6.4  
AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory recept...    21   8.5  

>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 269 ISKKHHPGWLTSKTVITYSLQKLLC 195
           +S K+HP     K V  Y L++L+C
Sbjct: 85  LSGKNHPHIQLPKHVDQYLLEQLVC 109


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 7/24 (29%), Positives = 15/24 (62%)
 Frame = -2

Query: 485 SNIKPHSKKLLSRTGYSRSTKFSK 414
           S ++PH  + + ++GY++ T   K
Sbjct: 163 SGLRPHLLENVKKSGYTKPTAIQK 186


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -2

Query: 230  TVITYSLQKLLCYT 189
            TV  Y+L+KLLC T
Sbjct: 1448 TVEKYTLEKLLCGT 1461


>AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory receptor
           candidate 54 protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +1

Query: 163 FVYQFCFISV*HNSFCSEYVITVFEV 240
           +++Q C I   H  F    V+TVF++
Sbjct: 109 WLHQICHICELHTIFLVCNVLTVFKI 134


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,868
Number of Sequences: 336
Number of extensions: 2847
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16188355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)