Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0666
         (630 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr ...    27   2.2  
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    27   2.2  
SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces pombe...    27   3.0  
SPBC21C3.07c |||actin binding methyltransferase |Schizosaccharom...    26   3.9  
SPBC577.04 |||human THOC5 homolog|Schizosaccharomyces pombe|chr ...    25   9.0  

>SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 591 RCFSTSSGIAYCSQECIIKP*LATVYF 511
           R  STS+GI+  + EC  +P   T+YF
Sbjct: 437 RANSTSNGISIFNTECQARPTNVTIYF 463


>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1157

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = -3

Query: 469 TRRSCSAGPGTVGARNSVNCSARTDPSSPVSNLN-*FLSCLPPFCTGNSYFDGRAPL 302
           T +   AG  T  +      SA TDP SPVS  N  FL+ L P   GN  +  ++PL
Sbjct: 161 TPQRAGAGVSTATSHTRRRSSAGTDPFSPVSPSNPNFLTPLKPI-DGNQEWQ-QSPL 215


>SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +2

Query: 269 WVIVYIKLTIL*RSAAIEIRISRTKWRKARKKSI*IRYWRAWVR 400
           WVI Y +   + R+A ++  +   KWR   K S+       W+R
Sbjct: 228 WVIGYSQSPRVFRAANVKPEVMNFKWRSNGKASMTTAIMEEWLR 271


>SPBC21C3.07c |||actin binding methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 281

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +3

Query: 456 QLLRVRLYIRGSGTELQMRSRRLRVKV 536
           ++L    YIRG GT + + +R+ RVK+
Sbjct: 244 RILSENFYIRGDGTRVLIVNRKKRVKM 270


>SPBC577.04 |||human THOC5 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 200

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -1

Query: 507 SVILFLSLEYKAALEEAAQQDRVQ*EHEIQ*IVAPVRTQALQYR 376
           S +L L    + + E+  Q   +  EH+ +   A +R QALQY+
Sbjct: 47  SKLLILREANRKSYEQLVQAKTITAEHKSELDNARIRLQALQYK 90


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,419,574
Number of Sequences: 5004
Number of extensions: 47451
Number of successful extensions: 117
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)