Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0666
         (630 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0678 - 5103836-5104613,5104697-5104888,5104994-5105036,510...    31   0.75 
12_02_1286 - 27555143-27555191,27555290-27555511,27555911-275561...    29   2.3  
02_02_0525 - 11182043-11182080,11182386-11182511,11182760-11183486     28   5.3  

>07_01_0678 -
           5103836-5104613,5104697-5104888,5104994-5105036,
           5105712-5105835,5105924-5106016,5106754-5106931,
           5107032-5107138,5108098-5108179,5108277-5108314,
           5108409-5108495,5109025-5109135,5109282-5109773
          Length = 774

 Score = 31.1 bits (67), Expect = 0.75
 Identities = 23/64 (35%), Positives = 28/64 (43%), Gaps = 7/64 (10%)
 Frame = -3

Query: 520 RLLRICNSVPE---PRI*SRTRRSCSAGPGTVGARNSVNCSART----DPSSPVSNLN*F 362
           RL R CNS P+   P    R RR  +AG G  GA  S  C   T    +P +P       
Sbjct: 90  RLPRACNSKPKPPPPPPPERPRRRAAAGGGAGGAEESPQCRVVTPLVSEPEAPAEMPRWR 149

Query: 361 LSCL 350
           L C+
Sbjct: 150 LRCM 153


>12_02_1286 -
           27555143-27555191,27555290-27555511,27555911-27556162,
           27556683-27557062,27557202-27557311,27557864-27558033,
           27558236-27558444,27558528-27558617,27559125-27559264,
           27559356-27559463,27559626-27559716,27560736-27560852,
           27561497-27561767,27561892-27562193,27562400-27562469,
           27563464-27563702,27564613-27564846,27564943-27565179,
           27565276-27565734
          Length = 1249

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 20/72 (27%), Positives = 34/72 (47%)
 Frame = +3

Query: 309 ARPSKYEFPVQNGGRQERNQFRFDTGELGSVRALQFTEFRAPTVPGPAEQLLRVRLYIRG 488
           AR +K++  +    ++++NQ+  +  ELGS R LQ  E          E+ L    Y+  
Sbjct: 698 ARSNKWDDSIIESWKKKKNQYESEMSELGSPRELQRKELAVSEKITGLEKKLH---YLNV 754

Query: 489 SGTELQMRSRRL 524
               L+ + RRL
Sbjct: 755 EENNLREKLRRL 766


>02_02_0525 - 11182043-11182080,11182386-11182511,11182760-11183486
          Length = 296

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 17/38 (44%), Positives = 21/38 (55%)
 Frame = -2

Query: 617 AGT*SRIEDAVSPRPAG*RTAARNVSLNLNSQPSTSHL 504
           AG+ S    + SP PA   TAA  + LNLN  P  +HL
Sbjct: 208 AGSSSTTTTSASPPPAP-ATAATALDLNLNLPPPLAHL 244


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,503,639
Number of Sequences: 37544
Number of extensions: 327390
Number of successful extensions: 625
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)