Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0663
         (749 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.16c |tim17||TIM23 translocase complex subunit Tim17|Sch...    27   2.2  
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ...    26   6.6  
SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr 2||...    26   6.6  

>SPAC3A12.16c |tim17||TIM23 translocase complex subunit
           Tim17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 164

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +1

Query: 439 VNEKK*TWNKILAGSFTQPTLYIRG 513
           V  K+  WN I+AG FT   L +RG
Sbjct: 83  VRRKEDPWNAIIAGFFTGGALAVRG 107


>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1147

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +1

Query: 301 ENLRRDFNQNKKE*LDKSLN 360
           E +  D NQN KE LDK LN
Sbjct: 854 ETVSADINQNLKETLDKLLN 873


>SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 525

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = -1

Query: 200 LDPPTQITR*ALYWLPKPANVY*EDCCHASSLFRKSKRYTKKN 72
           L P   + +  L WLPK + VY   C    ++ +K +++ K +
Sbjct: 151 LKPKPSVAQLFLSWLPKLSAVYGRYCVIQENIGKKVEKWMKNS 193


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,217,261
Number of Sequences: 5004
Number of extensions: 69153
Number of successful extensions: 145
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)