Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0663
         (749 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47942| Best HMM Match : TSP_1 (HMM E-Value=0)                       28   7.0  
SB_56816| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.3  
SB_38346| Best HMM Match : 7tm_1 (HMM E-Value=8.5e-20)                 28   9.3  
SB_27948| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.3  

>SB_47942| Best HMM Match : TSP_1 (HMM E-Value=0)
          Length = 2195

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -1

Query: 611  YLSRFTCTHWLGYDLVLILCFNKKVS 534
            Y+ R  C  W+   ++LI CFN  ++
Sbjct: 1779 YIGRLICVLWIVIGVILIACFNSTMT 1804


>SB_56816| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1200

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 16/33 (48%), Positives = 20/33 (60%)
 Frame = -1

Query: 248 TNRSCYVFRLFSRARWLDPPTQITR*ALYWLPK 150
           +NRS + +R F    W  P + I R ALYWLPK
Sbjct: 223 SNRSVFGYR-FRVYVWTIPVSVIKR-ALYWLPK 253


>SB_38346| Best HMM Match : 7tm_1 (HMM E-Value=8.5e-20)
          Length = 340

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 11/38 (28%), Positives = 23/38 (60%)
 Frame = -2

Query: 637 HVF*IRAYFIYHVLHVHIGLVTIWYLSSVLIKKFHNVI 524
           H+F + + FI ++  V  G+  ++ ++   +KK HNV+
Sbjct: 176 HLFILNSIFIANINLVAFGITLLFLVAVYSLKKHHNVV 213


>SB_27948| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 325

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +3

Query: 126 VFLIHISWFRKPIKSLSSNLCGR 194
           VF + +  FR  IKS++ +LCGR
Sbjct: 271 VFTLRMPLFRSEIKSIARSLCGR 293


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,109,137
Number of Sequences: 59808
Number of extensions: 481631
Number of successful extensions: 741
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)