Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0663
         (749 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83120-2|CAB05586.1|  883|Caenorhabditis elegans Hypothetical pr...    28   6.2  
U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy ch...    28   6.2  
L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy ch...    28   6.2  
AF106575-4|AAC78172.2|  548|Caenorhabditis elegans Hypothetical ...    28   6.2  

>Z83120-2|CAB05586.1|  883|Caenorhabditis elegans Hypothetical
           protein R06A4.4a protein.
          Length = 883

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +2

Query: 605 INKICPNLKNVVQFCSKKIQCDHNFTI 685
           I K+ P+L NV+++  KK Q DHN +I
Sbjct: 242 IEKMMPHLPNVIEYIIKKTQ-DHNESI 267


>U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy chain
            protein 1 protein.
          Length = 4568

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = -3

Query: 447  FIYHHLAA*IFKKFTALFRSPELSNSQHYIQR 352
            F+YH+    + + FT + ++PELS++  Y +R
Sbjct: 3766 FLYHYSLDFLVEIFTHVLKTPELSSTTDYAKR 3797


>L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy chain
            protein.
          Length = 4568

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = -3

Query: 447  FIYHHLAA*IFKKFTALFRSPELSNSQHYIQR 352
            F+YH+    + + FT + ++PELS++  Y +R
Sbjct: 3766 FLYHYSLDFLVEIFTHVLKTPELSSTTDYAKR 3797


>AF106575-4|AAC78172.2|  548|Caenorhabditis elegans Hypothetical
           protein K04F1.13 protein.
          Length = 548

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = -1

Query: 419 SSKNLPPCFDLLN*VIHNIIFNDLSNYSFLFWLKSRRRFSCEQ 291
           + + L P F  L   ++ II  +LSN + L +L +RR F CE+
Sbjct: 70  TGEQLEPYFQKLR-HLNGIIKVELSNLTSLSFLGNRREFKCEK 111


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,602,332
Number of Sequences: 27780
Number of extensions: 380569
Number of successful extensions: 693
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)