Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0662
         (721 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0138 + 7114949-7115656,7116388-7116435,7116830-7117988,711...    34   0.13 
10_01_0264 - 2773835-2774201,2774595-2775330,2775430-2775496           31   1.2  
12_01_0030 + 262452-263210,263332-263575,263867-264165                 30   1.6  
05_07_0344 + 29411767-29411961,29412692-29412741,29413295-294134...    29   3.7  
09_02_0601 + 11112201-11112386,11112471-11114080,11114345-111145...    29   4.9  
01_06_0740 + 31603996-31604820,31605080-31605391                       29   4.9  
07_01_0989 + 8348706-8348882,8348988-8349028,8350071-8350120,835...    28   8.6  
07_01_0472 - 3571989-3572042,3572126-3572233,3572251-3572478,357...    28   8.6  
06_03_1227 + 28557855-28558323,28558426-28558586,28558850-285589...    28   8.6  
06_03_0794 - 24671955-24672362,24672469-24672505,24672804-246728...    28   8.6  

>02_02_0138 +
           7114949-7115656,7116388-7116435,7116830-7117988,
           7118336-7118424,7118697-7118732
          Length = 679

 Score = 33.9 bits (74), Expect = 0.13
 Identities = 20/49 (40%), Positives = 23/49 (46%)
 Frame = +1

Query: 394 GP*ATSLLAPTSLPTPTSQVALLEPLPTQHPSCRPCRSHRLHHFPSQLI 540
           GP  T  +APT  PTP        PLP +H  C   R  R H  PS L+
Sbjct: 22  GPSLTVTVAPTPPPTPLDPRGY--PLPRRHLVCAAARILRSHASPSPLL 68


>10_01_0264 - 2773835-2774201,2774595-2775330,2775430-2775496
          Length = 389

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 7/63 (11%)
 Frame = -3

Query: 614 GRAAGVSSRSGVSCGQNGCRPLLDQM------SCDGK*C-SRCDRHGLHEGCCVGSGSKR 456
           G   G S  S  +C   GC   L+ M      +  G  C S CD  G  E CC G+ +  
Sbjct: 159 GGGGGGSLTSAATCAAAGCAADLNAMCPAELRAGGGAACRSACDAFGRPEFCCSGAFANP 218

Query: 455 ATC 447
           +TC
Sbjct: 219 STC 221


>12_01_0030 + 262452-263210,263332-263575,263867-264165
          Length = 433

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = -3

Query: 596 SSRSGVSCGQNGCRPLLDQMSCDGK*CSRCD--RHGLHEGCCVGSGS 462
           S R   S  +  C P+ +  +C G+ CS CD  R  LH  C  GS S
Sbjct: 312 SGRFNKSNSKPICSPVQNYNACFGRLCSFCDEPRTILHPPCATGSHS 358


>05_07_0344 +
           29411767-29411961,29412692-29412741,29413295-29413430,
           29413931-29414032,29414153-29414380,29414460-29414544,
           29414648-29414730,29414854-29414945,29415048-29415141
          Length = 354

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 23/83 (27%), Positives = 32/83 (38%), Gaps = 3/83 (3%)
 Frame = +3

Query: 291 KTPLLASTSYVSSTPLISQPIAYSAHFIKKRSPQWPV---SYIAPSSYITPNTYIASGPL 461
           ++PL A   Y   T L+ + +    H      P W +    Y  P     P+ YI   P 
Sbjct: 148 ESPLCAMNPY-GRTKLVIEDMCRDLH---ASDPNWKIILLRYFNPVG-AHPSGYIGEDPC 202

Query: 462 GATTYTTPFVQTVPIASTASLPV 530
           G      PFVQ V +    +L V
Sbjct: 203 GIPNNLMPFVQQVAVGRRPALTV 225


>09_02_0601 +
           11112201-11112386,11112471-11114080,11114345-11114579,
           11115233-11115358
          Length = 718

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +1

Query: 421 PTSLPTPTSQVALLEPLPTQHPSCRPCRSH 510
           PT  P+P+ Q  LL P P Q     P + H
Sbjct: 438 PTPPPSPSQQPPLLAPQPVQASPTSPAKQH 467


>01_06_0740 + 31603996-31604820,31605080-31605391
          Length = 378

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 18/51 (35%), Positives = 22/51 (43%)
 Frame = -3

Query: 545 DQMSCDGK*CSRCDRHGLHEGCCVGSGSKRATCDVGVGSDVGARSDVAHGP 393
           D M+CDG+       HG H G         +  DVG GS   AR+  A  P
Sbjct: 182 DAMACDGRFVMDVLLHGHHHGGAQLFRGITSLVDVGGGSGGAARASAAAFP 232


>07_01_0989 +
           8348706-8348882,8348988-8349028,8350071-8350120,
           8350502-8350646,8351570-8351626,8352141-8352261,
           8352436-8352945,8353242-8353289
          Length = 382

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 388 HNGP*ATSLLAPTSLPTPTSQVALLEPLPTQHPS 489
           H+ P       PT+ P+P     LL+P P  +PS
Sbjct: 307 HSAPLLQPFPLPTASPSPPYGTPLLQPFPPPNPS 340


>07_01_0472 -
           3571989-3572042,3572126-3572233,3572251-3572478,
           3573007-3573111,3573310-3573399,3573765-3574256
          Length = 358

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 9/81 (11%)
 Frame = +3

Query: 309 STSYVSSTPLISQ------PIAYSAHFIKKRSPQWPVSYIAPS---SYITPNTYIASGPL 461
           STS+    P ++       P +Y+A+ + K SP+W +  +  S    +    T   SG L
Sbjct: 226 STSHAKYVPFLAPFIGGALPGSYAAYHLVKHSPEWVMGVVFGSISLGFFAACTGTVSGLL 285

Query: 462 GATTYTTPFVQTVPIASTASL 524
           G ++ T  + +   I +  +L
Sbjct: 286 GTSSATFQYSRFAAITTFTAL 306


>06_03_1227 +
           28557855-28558323,28558426-28558586,28558850-28558929,
           28559015-28559150,28559239-28559388,28559717-28559899
          Length = 392

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 18/47 (38%), Positives = 25/47 (53%)
 Frame = +2

Query: 137 QRRASLTLGLLYTVWVHSFHQEAVCSLSACCVYRSCIILCYFSRRSN 277
           +RR    L  L TV  H+ H   VC+L  CCV R   ++ +FS R +
Sbjct: 106 ERRERDFLAELGTVG-HARHPN-VCALLGCCVDRDLYLVFHFSGRGS 150


>06_03_0794 -
           24671955-24672362,24672469-24672505,24672804-24672858,
           24674044-24674167,24674670-24674903
          Length = 285

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = +3

Query: 384 SPQWPVSYIAPSSYITPNTYIASGPLGATTYTTPFV 491
           +PQ   +  A     TP  +  SGP G TTYT  FV
Sbjct: 2   TPQRSPAAAAAGGGGTPALHYLSGPYGDTTYTKVFV 37


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,434,090
Number of Sequences: 37544
Number of extensions: 394266
Number of successful extensions: 1259
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1258
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)