Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0662
(721 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40414-2|AAA81405.2| 634|Caenorhabditis elegans Hypothetical pr... 30 1.4
Z78012-5|CAB01415.1| 590|Caenorhabditis elegans Hypothetical pr... 29 2.5
Z81560-7|CAB76737.2| 188|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z71265-6|CAA95837.1| 399|Caenorhabditis elegans Hypothetical pr... 29 3.3
Z71258-17|CAA95787.1| 399|Caenorhabditis elegans Hypothetical p... 29 3.3
U30248-1|AAC13874.1| 399|Caenorhabditis elegans transcription f... 29 3.3
U13614-1|AAA21347.1| 399|Caenorhabditis elegans protein ( Caeno... 29 3.3
Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical pr... 29 4.4
AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical ... 28 5.8
U28942-1|AAA68355.2| 441|Caenorhabditis elegans Hypothetical pr... 28 7.7
>U40414-2|AAA81405.2| 634|Caenorhabditis elegans Hypothetical
protein F53B3.2 protein.
Length = 634
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = +3
Query: 405 YIAPSSYITPNTYIASGPLGATTYTTPFVQTVPIASTASLP 527
+I PSS I N + P YTT T P++ TA LP
Sbjct: 295 FIRPSSIIRNNVWKKVTPSVTPEYTTSVFWTTPMSVTAELP 335
>Z78012-5|CAB01415.1| 590|Caenorhabditis elegans Hypothetical
protein C52E4.5 protein.
Length = 590
Score = 29.5 bits (63), Expect = 2.5
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +2
Query: 191 FHQEAVCSLSACCVYRSCIILCYFSRRS 274
F+++A+ L+AC ++ C++ CYFS S
Sbjct: 6 FNKQALAILAACFIFLLCVV-CYFSASS 32
>Z81560-7|CAB76737.2| 188|Caenorhabditis elegans Hypothetical
protein K02E2.8a protein.
Length = 188
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/56 (25%), Positives = 25/56 (44%)
Frame = +3
Query: 369 FIKKRSPQWPVSYIAPSSYITPNTYIASGPLGATTYTTPFVQTVPIASTASLPVAT 536
F+K + P ++ P + P T + + A T T P T P+++T + T
Sbjct: 7 FVKLAAACIPTQFVTP---LNPGTITTTTTISAPTTTVPITTTNPVSTTTTTTTTT 59
>Z71265-6|CAA95837.1| 399|Caenorhabditis elegans Hypothetical
protein M05B5.5a protein.
Length = 399
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +1
Query: 403 ATSLLAPTSLPTPTSQVALLEPLPTQHPS 489
+TS AP++ P PTS +LE PT P+
Sbjct: 100 STSTTAPSTAPAPTSTTDVLELKPTTAPA 128
>Z71258-17|CAA95787.1| 399|Caenorhabditis elegans Hypothetical
protein M05B5.5a protein.
Length = 399
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +1
Query: 403 ATSLLAPTSLPTPTSQVALLEPLPTQHPS 489
+TS AP++ P PTS +LE PT P+
Sbjct: 100 STSTTAPSTAPAPTSTTDVLELKPTTAPA 128
>U30248-1|AAC13874.1| 399|Caenorhabditis elegans transcription
factor E12/47 homolog protein.
Length = 399
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +1
Query: 403 ATSLLAPTSLPTPTSQVALLEPLPTQHPS 489
+TS AP++ P PTS +LE PT P+
Sbjct: 100 STSTTAPSTAPAPTSTTDVLELKPTTAPA 128
>U13614-1|AAA21347.1| 399|Caenorhabditis elegans protein (
Caenorhabditis elegansN2 basic-helix-loop-helix
transcription factor E12/47homolog mRNA, complete cds.
).
Length = 399
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +1
Query: 403 ATSLLAPTSLPTPTSQVALLEPLPTQHPS 489
+TS AP++ P PTS +LE PT P+
Sbjct: 100 STSTTAPSTAPAPTSTTDVLELKPTTAPA 128
>Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical protein
C06B8.7 protein.
Length = 3118
Score = 28.7 bits (61), Expect = 4.4
Identities = 26/85 (30%), Positives = 38/85 (44%)
Frame = +3
Query: 309 STSYVSSTPLISQPIAYSAHFIKKRSPQWPVSYIAPSSYITPNTYIASGPLGATTYTTPF 488
S+SY S S+ S K+RSPQ PVS I + P ++G L +T P
Sbjct: 3027 SSSYTSDA---SESTVQSTVVNKRRSPQPPVSPIPRA----PPLRNSNGFLASTNNFQPL 3079
Query: 489 VQTVPIASTASLPVATHLIKKRSAP 563
+P+ S P H ++ +AP
Sbjct: 3080 PTDIPMRSD---PELNHFVELHAAP 3101
>AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical
protein H02F09.3 protein.
Length = 1275
Score = 28.3 bits (60), Expect = 5.8
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Frame = +3
Query: 414 PSSYIT-PNTYIASGPLGATTYTTPFV--QTVPIASTASLPVATHLIKKRSAPVLA 572
PS+ +T PNT + S P ATT TT TV + + V T ++ S V A
Sbjct: 346 PSTVVTKPNTVVTSSPTVATTPTTVVTTPSTVVTVPSTVVTVPTTVVTNPSTVVTA 401
>U28942-1|AAA68355.2| 441|Caenorhabditis elegans Hypothetical
protein F56D3.1 protein.
Length = 441
Score = 27.9 bits (59), Expect = 7.7
Identities = 18/35 (51%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +3
Query: 432 PNTYIASGPLGATTYTT-PFVQTVPIASTASLPVA 533
P T + P ATT T PFVQT P A+ A+LP A
Sbjct: 114 PTTIRTTRPPPATTIRTIPFVQTTP-ATFATLPPA 147
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,583,479
Number of Sequences: 27780
Number of extensions: 308958
Number of successful extensions: 991
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 991
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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