Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0661
(661 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 169 4e-43
SPBC8D2.02c |||vacuolar sorting protein Vps68|Schizosaccharomyce... 28 1.4
SPCC777.07 |||alpha-1,2-mannosyltransferase |Schizosaccharomyces... 27 2.4
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 26 4.2
SPAC1783.03 |fta2|sma2|Sim4 and Mal2 associated |Schizosaccharom... 26 4.2
SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyc... 25 7.3
SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces po... 25 9.7
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 169 bits (410), Expect = 4e-43
Identities = 103/214 (48%), Positives = 126/214 (58%), Gaps = 6/214 (2%)
Frame = +1
Query: 37 PRKSYKMNSSCADILLFSAYKWNVSRPSLLADTKDTMDNTTTQKYWLDIQVGWGDYDSHD 216
PRKSYKMNSSCADILL +AYKWNVSRPSLL D +D +DNTTT KYW+D+Q+ +GDYDSHD
Sbjct: 1640 PRKSYKMNSSCADILLLAAYKWNVSRPSLLNDNRDVLDNTTTNKYWIDVQLRFGDYDSHD 1699
Query: 217 IERYARAKFW-ITLQTTCLYIFTYRFADRH*FGL*LAQCIR*LVPRLQTSY*QAMAKIMK 393
IERY RAKF + +Y + +P ++ Q+M KIMK
Sbjct: 1700 IERYTRAKFLDYSTDAQSMYPSPTGVLIGIDLCYNMHSAYGNWIPGMKPLIQQSMNKIMK 1759
Query: 394 ANPALYVLRERIRKALQLYS----*NLLNLTFPVRTMENCSXIKSFGSLMTRMCIV*QLQ 561
ANPALYVLRERIRK LQLY+ L+ + N + + + R+ I +
Sbjct: 1760 ANPALYVLRERIRKGLQLYASEPQEQYLSSSNYAELFSNQIQLFVDDTNVYRVTIHKTFE 1819
Query: 562 -NL*RKLDN*THQRSHFLYFNPRTGQLFLKIIHT 660
NL K N FNPRTGQLFLK+IHT
Sbjct: 1820 GNLTTKPIN-----GAIFIFNPRTGQLFLKVIHT 1848
Score = 71.7 bits (168), Expect = 9e-14
Identities = 47/113 (41%), Positives = 60/113 (53%), Gaps = 2/113 (1%)
Frame = +2
Query: 278 SPTGLLIAIDLAYNLHSAYGNWFPGCKPLINKRWPR**KLILPCMCFGNVYVKHCNCILR 457
SPTG+LI IDL YN+HSAYGNW PG KPLI + + K P + ++ +
Sbjct: 1721 SPTGVLIGIDLCYNMHSAYGNWIPGMKPLIQQSMNKIMK-ANPALYVLRERIRKGLQLYA 1779
Query: 458 TY*TLPFQSELWRIVL*SNHLVR**HE--CVSCNNYKTFEGNLTTKPINGAIF 610
+ + S L SN + + +KTFEGNLTTKPINGAIF
Sbjct: 1780 SEPQEQYLSSSNYAELFSNQIQLFVDDTNVYRVTIHKTFEGNLTTKPINGAIF 1832
Score = 62.9 bits (146), Expect = 4e-11
Identities = 32/54 (59%), Positives = 33/54 (61%)
Frame = +3
Query: 456 EPTEPYLSSQNYGELFXNQIIWFVDDTNVYRVTITKPLKET*QLNPSTEPFFIF 617
EP E YLSS NY ELF NQI FVDDTNVYRVTI K + P FIF
Sbjct: 1781 EPQEQYLSSSNYAELFSNQIQLFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIF 1834
>SPBC8D2.02c |||vacuolar sorting protein Vps68|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 170
Score = 27.9 bits (59), Expect = 1.4
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +2
Query: 215 TSKDMLVLNFGLHYRQHVYISSPTGLLIAIDLAYNLHSAYGNWFP 349
+S+ + V G+ + V++ L A D A NLH + +W P
Sbjct: 19 SSRSLGVYFAGIMFASAVWVFVDAALYSAFDYARNLHITFIDWIP 63
>SPCC777.07 |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 378
Score = 27.1 bits (57), Expect = 2.4
Identities = 11/23 (47%), Positives = 18/23 (78%), Gaps = 1/23 (4%)
Frame = -3
Query: 179 SSQYFCVVVLSIVSF-VSANKDG 114
SS YFC+++ I+SF + ++KDG
Sbjct: 6 SSIYFCILLFCIISFYLQSSKDG 28
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 26.2 bits (55), Expect = 4.2
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +2
Query: 32 PCLVNLIR*IHHAPIYYCSQPTSGTCPDHPY 124
P L L + HH + + PTS CP PY
Sbjct: 643 PYLCVLPKSCHHPQVKHNCHPTSEPCPPCPY 673
>SPAC1783.03 |fta2|sma2|Sim4 and Mal2 associated
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 351
Score = 26.2 bits (55), Expect = 4.2
Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Frame = +1
Query: 10 TRQKGNHAMPRKSYKMNSSCADILLFSAYKWNVSRPSLLADT-KDTMDNTTTQKYWLDIQ 186
T+Q A P+K K+NSS + I F+ +++ ++ + K ++ + K+ L+I+
Sbjct: 135 TKQVMPSAEPKKHVKLNSSISSI-RFTQHEFEAESEKIIHHSLKGDIEYLPSFKFLLEIK 193
Query: 187 VGWGDY 204
V DY
Sbjct: 194 VRTIDY 199
>SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 364
Score = 25.4 bits (53), Expect = 7.3
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 134 QRTQWTIQLHKSTGLIYRLVGVITILTTSKD 226
+R W IQL++S ++ + +TIL KD
Sbjct: 295 KRAHWRIQLYQSNPVLLHWLDEMTILICYKD 325
>SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 399
Score = 25.0 bits (52), Expect = 9.7
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 563 TFEGNLTTKPINGAIFYISIPELDS 637
T E LT + IF++SIP L++
Sbjct: 263 TGESKLTIPSLKSTIFFLSIPSLEA 287
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,009,707
Number of Sequences: 5004
Number of extensions: 66209
Number of successful extensions: 154
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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