Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0661
(661 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0474 - 3362734-3362827,3363179-3363366,3363458-3363700,336... 163 1e-40
05_01_0460 - 3644229-3644420,3644623-3644865,3644959-3645237,364... 163 1e-40
06_01_0076 - 622789-623689,623714-623931 28 7.6
>06_01_0474 - 3362734-3362827,3363179-3363366,3363458-3363700,
3363820-3364098,3364189-3364386,3364475-3365110,
3365209-3365463,3365579-3365685,3365770-3369566,
3369677-3370166,3370918-3371308,3371481-3371573,
3371687-3371810,3372544-3372791
Length = 2380
Score = 163 bits (395), Expect = 1e-40
Identities = 99/213 (46%), Positives = 123/213 (57%), Gaps = 5/213 (2%)
Frame = +1
Query: 37 PRKSYKMNSSCADILLFSAYKWNVSRPSLLADTKDTMDNTTTQKYWLDIQVGWGDYDSHD 216
PRKSYKMNSSCADILLF+A++W +S+PSL++++KD D + KYW+D+Q+ WGDYDSHD
Sbjct: 1631 PRKSYKMNSSCADILLFAAHRWQMSKPSLVSESKDVFDQKASNKYWIDVQLRWGDYDSHD 1690
Query: 217 IERYARAKFW-ITLQTTCLYIFTYRFADRH*FGL*LAQCIR*LVPRLQTSY*QAMAKIMK 393
IERY RAKF T +Y L P + QAM KIMK
Sbjct: 1691 IERYTRAKFMDYTTDNMSIYPSPTGVMIGIDLAYNLHSAFGNWFPGSKPLLQQAMNKIMK 1750
Query: 394 ANPALYVLRERIRKALQLYS*NLLNLTFPVRTMENCSXIKSFGSLM----TRMCIV*QLQ 561
+NPALYVLRERIRK LQLYS T P + +N I S + T + V +
Sbjct: 1751 SNPALYVLRERIRKGLQLYS---SEPTEPYLSSQNYGEIFSNQIIWFVDDTNVYRVTIHK 1807
Query: 562 NL*RKLDN*THQRSHFLYFNPRTGQLFLKIIHT 660
L + F+ FNPRTGQLFLK+IHT
Sbjct: 1808 TFEGNLTTKPINGAIFI-FNPRTGQLFLKVIHT 1839
Score = 84.6 bits (200), Expect = 6e-17
Identities = 56/129 (43%), Positives = 69/129 (53%), Gaps = 4/129 (3%)
Frame = +3
Query: 243 LDYTTDNMSIYLHLPVC*SPLIW-PITCTVHTVTGS--PVAN-LLLTSDGQDNES*SCLV 410
+DYTTDNMSIY P +I + +H+ G+ P + LL + + +S L
Sbjct: 1700 MDYTTDNMSIY---PSPTGVMIGIDLAYNLHSAFGNWFPGSKPLLQQAMNKIMKSNPALY 1756
Query: 411 CASGTYT*STAIVFLEPTEPYLSSQNYGELFXNQIIWFVDDTNVYRVTITKPLKET*QLN 590
+ EPTEPYLSSQNYGE+F NQIIWFVDDTNVYRVTI K +
Sbjct: 1757 VLRERIRKGLQLYSSEPTEPYLSSQNYGEIFSNQIIWFVDDTNVYRVTIHKTFEGNLTTK 1816
Query: 591 PSTEPFFIF 617
P FIF
Sbjct: 1817 PINGAIFIF 1825
Score = 78.2 bits (184), Expect = 5e-15
Identities = 48/113 (42%), Positives = 65/113 (57%), Gaps = 2/113 (1%)
Frame = +2
Query: 278 SPTGLLIAIDLAYNLHSAYGNWFPGCKPLINKRWPR**KLILPCMCFGNVYVKHCNCILR 457
SPTG++I IDLAYNLHSA+GNWFPG KPL+ + + K P + ++ +
Sbjct: 1712 SPTGVMIGIDLAYNLHSAFGNWFPGSKPLLQQAMNKIMK-SNPALYVLRERIRKGLQLYS 1770
Query: 458 TY*TLPFQSELWRIVL*SNHLVR**HE--CVSCNNYKTFEGNLTTKPINGAIF 610
+ T P+ S + SN ++ + +KTFEGNLTTKPINGAIF
Sbjct: 1771 SEPTEPYLSSQNYGEIFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIF 1823
>05_01_0460 - 3644229-3644420,3644623-3644865,3644959-3645237,
3645328-3645525,3645614-3646249,3646352-3646606,
3646718-3646824,3646909-3650705,3650816-3651305,
3652043-3652433,3652621-3652713,3652818-3652941,
3653871-3654118
Length = 2350
Score = 163 bits (395), Expect = 1e-40
Identities = 99/213 (46%), Positives = 123/213 (57%), Gaps = 5/213 (2%)
Frame = +1
Query: 37 PRKSYKMNSSCADILLFSAYKWNVSRPSLLADTKDTMDNTTTQKYWLDIQVGWGDYDSHD 216
PRKSYKMNSSCADILLF+A++W +S+PSL++++KD D + KYW+D+Q+ WGDYDSHD
Sbjct: 1631 PRKSYKMNSSCADILLFAAHRWQMSKPSLVSESKDVFDQKASNKYWIDVQLRWGDYDSHD 1690
Query: 217 IERYARAKFW-ITLQTTCLYIFTYRFADRH*FGL*LAQCIR*LVPRLQTSY*QAMAKIMK 393
IERY RAKF T +Y L P + QAM KIMK
Sbjct: 1691 IERYTRAKFMDYTTDNMSIYPSPTGVMIGIDLAYNLHSAFGNWFPGSKPLLQQAMNKIMK 1750
Query: 394 ANPALYVLRERIRKALQLYS*NLLNLTFPVRTMENCSXIKSFGSLM----TRMCIV*QLQ 561
+NPALYVLRERIRK LQLYS T P + +N I S + T + V +
Sbjct: 1751 SNPALYVLRERIRKGLQLYS---SEPTEPYLSSQNYGEIFSNQIIWFVDDTNVYRVTIHK 1807
Query: 562 NL*RKLDN*THQRSHFLYFNPRTGQLFLKIIHT 660
L + F+ FNPRTGQLFLK+IHT
Sbjct: 1808 TFEGNLTTKPINGAIFI-FNPRTGQLFLKVIHT 1839
Score = 84.6 bits (200), Expect = 6e-17
Identities = 56/129 (43%), Positives = 69/129 (53%), Gaps = 4/129 (3%)
Frame = +3
Query: 243 LDYTTDNMSIYLHLPVC*SPLIW-PITCTVHTVTGS--PVAN-LLLTSDGQDNES*SCLV 410
+DYTTDNMSIY P +I + +H+ G+ P + LL + + +S L
Sbjct: 1700 MDYTTDNMSIY---PSPTGVMIGIDLAYNLHSAFGNWFPGSKPLLQQAMNKIMKSNPALY 1756
Query: 411 CASGTYT*STAIVFLEPTEPYLSSQNYGELFXNQIIWFVDDTNVYRVTITKPLKET*QLN 590
+ EPTEPYLSSQNYGE+F NQIIWFVDDTNVYRVTI K +
Sbjct: 1757 VLRERIRKGLQLYSSEPTEPYLSSQNYGEIFSNQIIWFVDDTNVYRVTIHKTFEGNLTTK 1816
Query: 591 PSTEPFFIF 617
P FIF
Sbjct: 1817 PINGAIFIF 1825
Score = 78.2 bits (184), Expect = 5e-15
Identities = 48/113 (42%), Positives = 65/113 (57%), Gaps = 2/113 (1%)
Frame = +2
Query: 278 SPTGLLIAIDLAYNLHSAYGNWFPGCKPLINKRWPR**KLILPCMCFGNVYVKHCNCILR 457
SPTG++I IDLAYNLHSA+GNWFPG KPL+ + + K P + ++ +
Sbjct: 1712 SPTGVMIGIDLAYNLHSAFGNWFPGSKPLLQQAMNKIMK-SNPALYVLRERIRKGLQLYS 1770
Query: 458 TY*TLPFQSELWRIVL*SNHLVR**HE--CVSCNNYKTFEGNLTTKPINGAIF 610
+ T P+ S + SN ++ + +KTFEGNLTTKPINGAIF
Sbjct: 1771 SEPTEPYLSSQNYGEIFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIF 1823
>06_01_0076 - 622789-623689,623714-623931
Length = 372
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +2
Query: 245 GLHYRQHVYISSPTGLLIAIDLAYNLHSAYGNWFPG 352
G+H++ + IS +L+ +DL+ +H +YG FPG
Sbjct: 228 GVHFKPWLVISGD--MLLMLDLSVGIHHSYG--FPG 259
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,703,231
Number of Sequences: 37544
Number of extensions: 397315
Number of successful extensions: 899
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 897
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -