Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0661
         (661 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40492| Best HMM Match : PROCN (HMM E-Value=0)                      138   5e-33
SB_23097| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.83 
SB_36047| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_29622| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_46297| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_15712| Best HMM Match : Cadherin (HMM E-Value=0)                    28   7.7  

>SB_40492| Best HMM Match : PROCN (HMM E-Value=0)
          Length = 1784

 Score =  138 bits (333), Expect = 5e-33
 Identities = 58/69 (84%), Positives = 64/69 (92%)
 Frame = +1

Query: 37   PRKSYKMNSSCADILLFSAYKWNVSRPSLLADTKDTMDNTTTQKYWLDIQVGWGDYDSHD 216
            PRKSYKMNSSCADILLF+AYKWN+ +PSLLADT DTMD T TQKYW+D+Q+ WGDYDSHD
Sbjct: 1534 PRKSYKMNSSCADILLFAAYKWNIFKPSLLADTNDTMDGTVTQKYWVDVQLRWGDYDSHD 1593

Query: 217  IERYARAKF 243
            IERYARAKF
Sbjct: 1594 IERYARAKF 1602



 Score = 37.9 bits (84), Expect = 0.007
 Identities = 16/16 (100%), Positives = 16/16 (100%)
 Frame = +2

Query: 563  TFEGNLTTKPINGAIF 610
            TFEGNLTTKPINGAIF
Sbjct: 1684 TFEGNLTTKPINGAIF 1699



 Score = 36.3 bits (80), Expect = 0.022
 Identities = 15/16 (93%), Positives = 16/16 (100%)
 Frame = +2

Query: 278  SPTGLLIAIDLAYNLH 325
            SPTGLL+AIDLAYNLH
Sbjct: 1615 SPTGLLVAIDLAYNLH 1630



 Score = 36.3 bits (80), Expect = 0.022
 Identities = 15/15 (100%), Positives = 15/15 (100%)
 Frame = +1

Query: 616  FNPRTGQLFLKIIHT 660
            FNPRTGQLFLKIIHT
Sbjct: 1701 FNPRTGQLFLKIIHT 1715



 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/11 (100%), Positives = 11/11 (100%)
 Frame = +3

Query: 243  LDYTTDNMSIY 275
            LDYTTDNMSIY
Sbjct: 1603 LDYTTDNMSIY 1613


>SB_23097| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 393

 Score = 31.1 bits (67), Expect = 0.83
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = +2

Query: 260 QHVYISSPTGLLIAIDLAYNLHSAYGNWFPGCKPLINKRW 379
           +H+  + P  L   IDL   +H A   W    K ++ ++W
Sbjct: 292 RHILFNCPVSLCFRIDLDVRIHRAIDQWESETKRMMGRKW 331


>SB_36047| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 980

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +2

Query: 158 LHKSTGLIYRLVGVITILTTSKDMLVLNFGLH-YRQHVYISSPTGLLI 298
           ++  T L+ +  GV+TI  T  D L  NF    Y  H+  +SP G  I
Sbjct: 212 MNNHTDLMLQSFGVVTINVTDVDDLPANFSQKLYEAHIDKNSPLGSFI 259


>SB_29622| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 178

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
 Frame = +2

Query: 170 TGLIYRLVGVITILTTSKDM---LVLNFGLHYRQHVYISSPTGLLIAIDLAYNLHS 328
           TGL +  VGV T L  + D+   L +N GL    H  +  PTGL   +D+   LH+
Sbjct: 118 TGL-HANVGVPTGLHANVDLPIGLHVNVGLPIGLHTNVDLPTGLHANVDVPTGLHA 172


>SB_46297| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 61

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +1

Query: 13  RQKGNHAMPRKSYKMNSSCADILLFSAYKWNVSRPSLLADTKDTMDNTTT 162
           R+KG      +S   N+S A  L F A+ W  +     A + D +DN  T
Sbjct: 9   REKGGQVSGGRSLWKNASNAAFLRFLAFGWPFAHMFFRALSPDCVDNRIT 58


>SB_15712| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 1075

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = +2

Query: 158 LHKSTGLIYRLVGVITILTTSKDMLVLNFGLH-YRQHVYISSPTGLLIAIDLAYNL 322
           ++  T L+ +  GV+TI  T  D L  NF    Y  H+  +SP        LA+ L
Sbjct: 195 MNNHTDLMLQSFGVVTINITDVDDLPANFSQKLYEAHIDKNSPLAKSTTQPLAFTL 250


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,529,676
Number of Sequences: 59808
Number of extensions: 501371
Number of successful extensions: 1136
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1004
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1125
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)