Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0661
(661 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L14433-3|AAA27977.1| 2329|Caenorhabditis elegans Yeast prp (spli... 189 2e-48
AC098856-8|ABO52819.1| 384|Caenorhabditis elegans Hypothetical ... 29 2.2
AY125085-1|AAM94369.1| 1113|Caenorhabditis elegans regulatory cy... 29 2.9
AF024497-4|AAO21479.1| 807|Caenorhabditis elegans Defective in ... 29 2.9
AF024497-3|AAO21478.1| 1036|Caenorhabditis elegans Defective in ... 29 2.9
AF024497-2|AAB70342.2| 1113|Caenorhabditis elegans Defective in ... 29 2.9
Z75535-1|CAA99827.1| 1127|Caenorhabditis elegans Hypothetical pr... 27 8.9
>L14433-3|AAA27977.1| 2329|Caenorhabditis elegans Yeast prp (splicing
factor) relatedprotein 8 protein.
Length = 2329
Score = 189 bits (460), Expect = 2e-48
Identities = 112/213 (52%), Positives = 130/213 (61%), Gaps = 5/213 (2%)
Frame = +1
Query: 37 PRKSYKMNSSCADILLFSAYKWNVSRPSLLADTKDTMDNTTTQKYWLDIQVGWGDYDSHD 216
PRKSYKMNSSCAD+LLF+ YKWNVSRPSL+AD+KD MDNTTTQKYWLD+Q+ WGDYDSHD
Sbjct: 1609 PRKSYKMNSSCADVLLFAQYKWNVSRPSLMADSKDVMDNTTTQKYWLDVQLRWGDYDSHD 1668
Query: 217 IERYARAKFW-ITLQTTCLYIFTYRFADRH*FGL*LAQCIR*LVPRLQTSY*QAMAKIMK 393
+ERYARAKF T +Y L P ++ QAMAKI+K
Sbjct: 1669 VERYARAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLYSAYGNWFPGMKPLIRQAMAKIIK 1728
Query: 394 ANPALYVLRERIRKALQLYS*NLLNLTFPVRTMENCSXIKSFGSLM----TRMCIV*QLQ 561
ANPA YVLRERIRK LQLYS T P T +N + S + T + V +
Sbjct: 1729 ANPAFYVLRERIRKGLQLYS---SEPTEPYLTSQNYGELFSNQIIWFVDDTNVYRVTIHK 1785
Query: 562 NL*RKLDN*THQRSHFLYFNPRTGQLFLKIIHT 660
L + F+ FNPRTGQLFLKIIHT
Sbjct: 1786 TFEGNLTTKPINGAIFI-FNPRTGQLFLKIIHT 1817
Score = 80.2 bits (189), Expect = 1e-15
Identities = 51/113 (45%), Positives = 65/113 (57%), Gaps = 2/113 (1%)
Frame = +2
Query: 278 SPTGLLIAIDLAYNLHSAYGNWFPGCKPLINKRWPR**KLILPCMCFGNVYVKHCNCILR 457
SPTG+LIAIDLAYNL+SAYGNWFPG KPLI + + K P ++ +
Sbjct: 1690 SPTGVLIAIDLAYNLYSAYGNWFPGMKPLIRQAMAKIIK-ANPAFYVLRERIRKGLQLYS 1748
Query: 458 TY*TLPFQSELWRIVL*SNHLVR**HE--CVSCNNYKTFEGNLTTKPINGAIF 610
+ T P+ + L SN ++ + +KTFEGNLTTKPINGAIF
Sbjct: 1749 SEPTEPYLTSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIF 1801
Score = 79.8 bits (188), Expect = 2e-15
Identities = 37/54 (68%), Positives = 39/54 (72%)
Frame = +3
Query: 456 EPTEPYLSSQNYGELFXNQIIWFVDDTNVYRVTITKPLKET*QLNPSTEPFFIF 617
EPTEPYL+SQNYGELF NQIIWFVDDTNVYRVTI K + P FIF
Sbjct: 1750 EPTEPYLTSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIF 1803
>AC098856-8|ABO52819.1| 384|Caenorhabditis elegans Hypothetical
protein Y37F4.6 protein.
Length = 384
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 397 NPALYVLRERIRKALQLYS*NLLNLTFPVRTMENC 501
N A+Y RE I + LQL+ L + +P++ M C
Sbjct: 183 NDAVYSTRESIEEDLQLFDDGQLVVNYPLKAMYKC 217
>AY125085-1|AAM94369.1| 1113|Caenorhabditis elegans regulatory
cytoplasmic polyA polymeraseprotein.
Length = 1113
Score = 29.1 bits (62), Expect = 2.9
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +1
Query: 7 GTRQKGNHAMPRKSYKMNSSCADI 78
GT +K + +PRK+ + NSSC+ I
Sbjct: 474 GTEEKALNELPRKANRRNSSCSSI 497
>AF024497-4|AAO21479.1| 807|Caenorhabditis elegans Defective in
germ line developmentprotein 2, isoform d protein.
Length = 807
Score = 29.1 bits (62), Expect = 2.9
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +1
Query: 7 GTRQKGNHAMPRKSYKMNSSCADI 78
GT +K + +PRK+ + NSSC+ I
Sbjct: 168 GTEEKALNELPRKANRRNSSCSSI 191
>AF024497-3|AAO21478.1| 1036|Caenorhabditis elegans Defective in
germ line developmentprotein 2, isoform c protein.
Length = 1036
Score = 29.1 bits (62), Expect = 2.9
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +1
Query: 7 GTRQKGNHAMPRKSYKMNSSCADI 78
GT +K + +PRK+ + NSSC+ I
Sbjct: 397 GTEEKALNELPRKANRRNSSCSSI 420
>AF024497-2|AAB70342.2| 1113|Caenorhabditis elegans Defective in
germ line developmentprotein 2, isoform a protein.
Length = 1113
Score = 29.1 bits (62), Expect = 2.9
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +1
Query: 7 GTRQKGNHAMPRKSYKMNSSCADI 78
GT +K + +PRK+ + NSSC+ I
Sbjct: 474 GTEEKALNELPRKANRRNSSCSSI 497
>Z75535-1|CAA99827.1| 1127|Caenorhabditis elegans Hypothetical
protein F14B4.3 protein.
Length = 1127
Score = 27.5 bits (58), Expect = 8.9
Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 7/54 (12%)
Frame = +3
Query: 300 PLIWPITCTVHTVTGSP-------VANLLLTSDGQDNES*SCLVCASGTYT*ST 440
P W C VHT G+P A+ + +D DN + L+ G YT T
Sbjct: 465 PEAWGFICPVHTPDGAPCGLLNHVTASCRIVTDLSDNSNVPSLLAELGMYTHKT 518
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,550,973
Number of Sequences: 27780
Number of extensions: 366515
Number of successful extensions: 801
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 800
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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