Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0660
         (706 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q22AC4 Cluster: Putative uncharacterized protein; n=1; ...    35   1.7  
UniRef50_Q0F3Q9 Cluster: Putative uncharacterized protein; n=1; ...    33   6.8  
UniRef50_UPI0000DB71EF Cluster: PREDICTED: similar to PRP4 pre-m...    33   9.0  
UniRef50_Q4QGV3 Cluster: ABC transporter, putative; n=3; Leishma...    33   9.0  

>UniRef50_Q22AC4 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 795

 Score = 35.1 bits (77), Expect = 1.7
 Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
 Frame = +3

Query: 441 IIIERDSKQQTNLRHEKVGPNWETNL-RTISDL*SLTPPSQS**NLHI*YIKFCVVGVWL 617
           I+I+ D +QQ  L+ +    N  TNL +TIS++ S  PPSQ          +  ++    
Sbjct: 520 ILIQDDLQQQQQLQQQNQNRNSSTNLLQTISNVASALPPSQK---------QIQIIENIE 570

Query: 618 PNSSEMAQPILMKFRVHIGVGLIHQN 695
           PN  +  + IL K + +I  GL + N
Sbjct: 571 PNQYKNIESILKKDKYYINQGLTYAN 596


>UniRef50_Q0F3Q9 Cluster: Putative uncharacterized protein; n=1;
           Mariprofundus ferrooxydans PV-1|Rep: Putative
           uncharacterized protein - Mariprofundus ferrooxydans
           PV-1
          Length = 64

 Score = 33.1 bits (72), Expect = 6.8
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +1

Query: 244 KKKLTEKIFGTGSFCIRFIIRVWQ-FFTWPGRSMGGRKRSKSGPNR 378
           + KLT ++    +  + FII +WQ FF+ P R M  +++   G NR
Sbjct: 7   RNKLTRELAAALAIKVLFIILIWQTFFSGPSREMNTKEQILGGINR 52


>UniRef50_UPI0000DB71EF Cluster: PREDICTED: similar to PRP4 pre-mRNA
           processing factor 4 homolog B; n=1; Apis mellifera|Rep:
           PREDICTED: similar to PRP4 pre-mRNA processing factor 4
           homolog B - Apis mellifera
          Length = 715

 Score = 32.7 bits (71), Expect = 9.0
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = +3

Query: 441 IIIERDSKQQTNLRHEKVGPNWETNLRTISDL*SLTPPSQS 563
           +IIER  KQ+  L     GPN ++N+    ++   TPPS+S
Sbjct: 541 VIIERRRKQREELLKRLGGPNEDSNMSADINIVPATPPSES 581


>UniRef50_Q4QGV3 Cluster: ABC transporter, putative; n=3;
            Leishmania|Rep: ABC transporter, putative - Leishmania
            major
          Length = 1884

 Score = 32.7 bits (71), Expect = 9.0
 Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
 Frame = -1

Query: 475  FVCCLLSRSMIIRGNVCWLLNIRESW--GQDILNVCLDQILIAYVLPSNDLAM*KIATP 305
            F+  LL+ +  I G++ W   +  S+  G+ I+N+ +D+   A  LPSN  AM  +  P
Sbjct: 1246 FIFSLLNSTAKISGSLRWPFRLVPSYCVGESIINLAMDRQQAALNLPSNPWAMEVVGWP 1304


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 701,237,798
Number of Sequences: 1657284
Number of extensions: 13904531
Number of successful extensions: 32284
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 31423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32281
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 56198352344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)