Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0660
         (706 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM269505-4|CAK30051.1|   23|Tribolium castaneum mlpt peptide 4 p...    23   3.2  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    22   4.2  
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       21   9.8  

>AM269505-4|CAK30051.1|   23|Tribolium castaneum mlpt peptide 4
           protein.
          Length = 23

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +1

Query: 334 RSMGGRKRSKSGPNRRLR 387
           R  GGR  + SG  RRLR
Sbjct: 6   RGDGGRPETSSGRRRRLR 23


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 199 RNVQSKVQNKQETRRYLRTNY 137
           R + S +Q +Q  RR+ RT Y
Sbjct: 125 RTIYSSLQLQQLNRRFQRTQY 145


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = -3

Query: 656 FHKNRLSHFGGVWQPNTHDAEFY 588
           +H   L HFG     N+   E+Y
Sbjct: 135 YHHQLLGHFGATKVYNSMKREYY 157


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,773
Number of Sequences: 336
Number of extensions: 3516
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18634795
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)